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Many research groups aspire to make data and code FAIR and reproducible, yet struggle because the data and code life cycles are disconnected, executable environments are often missing from published work, and technical skill requirements…

This paper presents new results about the optimization based generation of chemical reaction networks (CRNs) of higher deficiency. Firstly, it is shown that the graph structure of the realization containing the maximal number of reactions…

Molecular Networks · Quantitative Biology 2011-03-23 Gabor Szederkenyi , Katalin M. Hangos , Tamas Peni

Firedrake is a new tool for automating the numerical solution of partial differential equations. Firedrake adopts the domain-specific language for the finite element method of the FEniCS project, but with a pure Python runtime-only…

The integration of machine learning techniques in materials discovery has become prominent in materials science research and has been accompanied by an increasing trend towards open-source data and tools to propel the field. Despite the…

Materials Science · Physics 2026-05-27 Daniel Persaud , Logan Ward , Jason Hattrick-Simpers

Code comment generation aims to generate high-quality comments from source code automatically and has been studied for years. Recent studies proposed to integrate information retrieval techniques with neural generation models to tackle this…

Software Engineering · Computer Science 2024-08-08 Hanzhen Lu , Zhongxin Liu

Thanks to unprecedented language understanding and generation capabilities of large language model (LLM), Retrieval-augmented Code Generation (RaCG) has recently been widely utilized among software developers. While this has increased…

Computation and Language · Computer Science 2024-11-26 Geonmin Kim , Jaeyeon Kim , Hancheol Park , Wooksu Shin , Tae-Ho Kim

In this study, we reproduced the work done in the paper "XRec: Large Language Models for Explainable Recommendation" by Ma et al. (2024). The original authors introduced XRec, a model-agnostic collaborative instruction-tuning framework that…

Computation and Language · Computer Science 2025-10-09 Ranjan Mishra , Julian I. Bibo , Quinten van Engelen , Henk Schaapman

Code generation aims to automatically generate code snippets of specific programming language according to natural language descriptions. The continuous advancements in deep learning, particularly pre-trained models, have empowered the code…

Software Engineering · Computer Science 2025-01-24 Zezhou Yang , Sirong Chen , Cuiyun Gao , Zhenhao Li , Xing Hu , Kui Liu , Xin Xia

Automatically generating compilable programs with (or without) natural language descriptions has always been a touchstone problem for computational linguistics and automated software engineering. Existing deep-learning approaches model code…

Computation and Language · Computer Science 2022-03-11 Xin Wang , Yasheng Wang , Yao Wan , Fei Mi , Yitong Li , Pingyi Zhou , Jin Liu , Hao Wu , Xin Jiang , Qun Liu

Automatic generation of executable Blender code from natural language remains challenging, with state-of-the-art LLMs producing frequent syntactic errors and geometrically inconsistent objects. We present BlenderRAG, a retrieval-augmented…

Computer Vision and Pattern Recognition · Computer Science 2026-05-04 Massimo Rondelli , Francesco Pivi , Maurizio Gabbrielli

The conformal formulation of the Einstein constraint equations is first reviewed, and we then consider the design, analysis, and implementation of adaptive multilevel finite element-type numerical methods for the resulting coupled nonlinear…

General Relativity and Quantum Cosmology · Physics 2009-04-07 Burak Aksoylu , David Bernstein , Stephen Bond , Michael Holst

Reproducing machine learning papers is essential for scientific progress but remains challenging for both humans and automated agents. Existing agent-based methods often struggle to fully and accurately reproduce implementation details such…

Software Engineering · Computer Science 2025-08-26 Mingyang Zhou , Quanming Yao , Lun Du , Lanning Wei , Da Zheng

Porting GCC to new architecture requires writing a Machine Description (MD) file that contains mapping from GCC's intermediate form to the target assembly code. Constructing an MD file is a difficult task because it requires the user to…

Programming Languages · Computer Science 2013-10-04 Saravana Perumal P , Amey Karkare

Cyclic codes over finite fields are widely implemented in data storage systems, communication systems, and consumer electronics, as they have very efficient encoding and decoding algorithms. They are also important in theory, as they are…

Information Theory · Computer Science 2024-12-03 Cunsheng Ding

An essential part of research and scientific communication is researchers' ability to reproduce the results of others. While there have been increasing standards for authors to make data and code available, many of these files are hard to…

Digital Libraries · Computer Science 2021-09-23 Layan Bahaidarah , Ethan Hung , Andreas F. De Melo Oliveira , Jyotsna Penumaka , Lukas Rosario , Ana Trisovic

We investigate the problem of generating common randomness (CR) from finite compound sources aided by unidirectional communication over rate-limited perfect channels. The two communicating parties, often referred to as terminals, observe…

Information Theory · Computer Science 2024-01-26 Rami Ezzine , Moritz Wiese , Christian Deppe , Holger Boche

Despite recent progress in Large Language Model (LLM) Agents for Software Engineering (SWE) tasks, end-to-end fine-tuning typically relies on verifiable terminal rewards such as whether all unit tests pass. While these binary signals…

Machine Learning · Computer Science 2026-04-21 Jiawei Huang , Qingping Yang , Renjie Zheng , Jiaze Chen

Assembling simulation software along with the associated tools and utilities is a challenging endeavor, particularly when the components are distributed across multiple source code versioning systems. It is problematic for researchers…

Programming Languages · Computer Science 2010-09-08 Eric L. Seidel , Gabrielle Allen , Steven Brandt , Frank Löffler , Erik Schnetter

This paper proposes dynamic chunk reader (DCR), an end-to-end neural reading comprehension (RC) model that is able to extract and rank a set of answer candidates from a given document to answer questions. DCR is able to predict answers of…

Computation and Language · Computer Science 2016-11-03 Yang Yu , Wei Zhang , Kazi Hasan , Mo Yu , Bing Xiang , Bowen Zhou

This paper proposes the response surface method for finite element model updating. The response surface method is implemented by approximating the finite element model surface response equation by a multi-layer perceptron. The updated…

Computational Engineering, Finance, and Science · Computer Science 2007-05-23 Tshilidzi Marwala