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Here we show that deciding whether two rooted binary phylogenetic trees on the same set of taxa permit a cherry-picking sequence, a special type of elimination order on the taxa, is NP-complete. This improves on an earlier result which…

Populations and Evolution · Quantitative Biology 2021-04-13 Janosch Döcker , Leo van Iersel , Steven Kelk , Simone Linz

The three-in-a-tree problem is to determine if a simple undirected graph contains an induced subgraph which is a tree connecting three given vertices. Based on a beautiful characterization that is proved in more than twenty pages,…

Data Structures and Algorithms · Computer Science 2022-01-06 Kai-Yuan Lai , Hsueh-I Lu , Mikkel Thorup

We extend classical methods of computational complexity to the realm of distributed computing, where they sometimes prove more effective than in their original context. Our focus is on decision problems in the LOCAL model, a setting in…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-09-08 Fabian Reiter

The maximum labelled clique problem is a variant of the maximum clique problem where edges in the graph are given labels, and we are not allowed to use more than a certain number of distinct labels in a solution. We introduce a new…

Data Structures and Algorithms · Computer Science 2014-11-18 Ciaran McCreesh , Patrick Prosser

We derive tight bounds on the expected weights of several combinatorial optimization problems for random point sets of size $n$ distributed among the leaves of a balanced hierarchically separated tree. We consider {\it monochromatic} and…

Discrete Mathematics · Computer Science 2013-07-29 Béla Csaba , Thomas A. Plick , Ali Shokoufandeh

A chief problem in phylogenetics and database theory is the computation of a maximum consistent tree from a set of rooted or unrooted trees. A standard input are triplets, rooted binary trees on three leaves, or quartets, unrooted binary…

Discrete Mathematics · Computer Science 2010-05-31 Leo van Iersel , Matthias Mnich

It is well known that many local graph problems, like Vertex Cover and Dominating Set, can be solved in 2^{O(tw)}|V|^{O(1)} time for graphs G=(V,E) with a given tree decomposition of width tw. However, for nonlocal problems, like the…

Data Structures and Algorithms · Computer Science 2012-11-08 Hans L. Bodlaender , Marek Cygan , Stefan Kratsch , Jesper Nederlof

We consider problems that can be formulated as a task of finding an optimal triangulation of a graph w.r.t. some notion of optimality. We present algorithms parameterized by the size of a minimum edge clique cover ($cc$) to such problems.…

Data Structures and Algorithms · Computer Science 2022-02-08 Tuukka Korhonen

A temporal graph is a graph in which edges are assigned a time label. Two nodes u and v of a temporal graph are connected one to the other if there exists a path from u to v with increasing edge time labels. We consider the problem of…

Data Structures and Algorithms · Computer Science 2023-04-04 Alkida Balliu , Filippo Brunelli , Pierluigi Crescenzi , Dennis Olivetti , Laurent Viennot

We present simple deterministic algorithms for subgraph finding and enumeration in the broadcast CONGEST model of distributed computation: -- For any constant $k$, detecting $k$-paths and trees on $k$ nodes can be done in $O(1)$ rounds. --…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-09-22 Janne H. Korhonen , Joel Rybicki

We present deterministic distributed algorithms for computing approximate maximum cardinality matchings and approximate maximum weight matchings. Our algorithm for the unweighted case computes a matching whose size is at least $(1-\eps)$…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-11-12 Guy Even , Moti Medina , Dana Ron

We connect three distinct lines of research that have recently explored extensions of the classical LOCAL model of distributed computing: A. distributed quantum computing and non-signaling distributions [e.g. STOC 2024], B.…

We prove exact bounds on the time complexity of distributed graph colouring. If we are given a directed path that is properly coloured with $n$ colours, by prior work it is known that we can find a proper 3-colouring in $\frac{1}{2}…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-02-27 Joel Rybicki , Jukka Suomela

We investigate the number of permutations that occur in random labellings of trees. This is a generalisation of the number of subpermutations occurring in a random permutation. It also generalises some recent results on the number of…

Probability · Mathematics 2022-12-22 Michael Albert , Cecilia Holmgren , Tony Johansson , Fiona Skerman

We consider the problem of finding a subgraph of a given graph which maximizes a given function evaluated at its degree sequence. While the problem is intractable already for convex functions, we show that it can be solved in polynomial…

Combinatorics · Mathematics 2020-11-10 Shmuel Onn

The domination problem and its variants represent a classical domain within algorithmic graph theory. Among these variants, the paired-domination problem holds particular prominence due to its real-world implications in security and…

Data Structures and Algorithms · Computer Science 2024-12-02 Ta-Yu Mu , Ching-Chi Lin

We study a hypothesis testing problem in which data is compressed distributively and sent to a detector that seeks to decide between two possible distributions for the data. The aim is to characterize all achievable encoding rates and…

Information Theory · Computer Science 2011-02-01 Md. Saifur Rahman , Aaron B. Wagner

Multi-label classification is a challenging task, particularly in domains where the number of labels to be predicted is large. Deep neural networks are often effective at multi-label classification of images and textual data. When dealing…

Machine Learning · Computer Science 2023-03-30 Nikolaos Mylonas , Ioannis Mollas , Nick Bassiliades , Grigorios Tsoumakas

The online dominating set problem is an online variant of the minimum dominating set problem, which is one of the most important NP-hard problems on graphs. This problem is defined as follows: Given an undirected graph $G = (V, E)$, in…

Data Structures and Algorithms · Computer Science 2017-11-01 Koji M. Kobayashi

Many discrete optimization problems amount to selecting a feasible set of edges of least weight. We consider in this paper the context of spatial graphs where the positions of the vertices are uncertain and belong to known uncertainty sets.…

Data Structures and Algorithms · Computer Science 2022-09-27 Marin Bougeret , Jérémy Omer , Michael Poss
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