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This note introduces the $\texttt{LikelihoodGeometry}$ package for the computer algebra system $\textit{Macaulay2}$. This package gives tools to construct the likelihood correspondence of a discrete algebraic statistical model, a variety…

Computation · Statistics 2024-11-19 David Barnhill , John Cobb , Matthew Faust

Graph clustering aims at discovering a natural grouping of the nodes such that similar nodes are assigned to a common cluster. Many different algorithms have been proposed in the literature: for simple graphs, for graphs with attributes…

Machine Learning · Computer Science 2023-11-06 Ylli Sadikaj , Yllka Velaj , Sahar Behzadi , Claudia Plant

We describe the \proglang{R} package \pkg{glmmrBase} and an extension \pkg{glmmrOptim}. \pkg{glmmrBase} provides a flexible approach to specifying, fitting, and analysing generalised linear mixed models. We use an object-orientated class…

Computation · Statistics 2024-03-15 Samuel I. Watson

As the calculation of centrality in complex networks becomes increasingly vital across technological, biological, and social systems, precise and scalable ranking methods are essential for understanding these networks. This paper introduces…

Social and Information Networks · Computer Science 2025-01-30 Hao Ren , Jiaojiao Jiang

Complex network theory aims to model and analyze complex systems that consist of multiple and interdependent components. Among all studies on complex networks, topological structure analysis is of the most fundamental importance, as it…

Social and Information Networks · Computer Science 2010-09-15 Bo Yang , Jiming Liu

The R package GFA provides a full pipeline for factor analysis of multiple data sources that are represented as matrices with co-occurring samples. It allows learning dependencies between subsets of the data sources, decomposed into latent…

Mathematical Software · Computer Science 2016-11-08 Eemeli Leppäaho , Muhammad Ammad-ud-din , Samuel Kaski

Current decision support systems address domains that are heterogeneous in nature and becoming progressively larger. Such systems often require the input of expert judgement about a variety of different fields and an intensive computational…

Other Statistics · Statistics 2017-07-10 Manuele Leonelli , Eva Riccomagno , Jim Q. Smith

This is the compendium of the cluster algebra and quiver package for sage. The purpose of this package is to provide a platform to work with cluster algebras in graduate courses and to further develop the theory by working on examples, by…

Combinatorics · Mathematics 2011-03-30 Gregg Musiker , Christian Stump

Algebraic statistics uses tools from algebra (especially from multilinear algebra, commutative algebra and computational algebra), geometry and combinatorics to provide insight into knotty problems in mathematical statistics. In this survey…

Statistics Theory · Mathematics 2019-06-25 Marta Casanellas , Sonja Petrović , Caroline Uhler

Networks (or graphs) are used to model the dyadic relations between entities in a complex system. In cases where there exists multiple relations between the entities, the complex system can be represented as a multilayer network, where the…

Social and Information Networks · Computer Science 2019-10-04 Abhishek Santra , Sanjukta Bhowmick , Sharma Chakravarthy

Multi-kernel learning (MKL) has been widely used in function approximation tasks. The key problem of MKL is to combine kernels in a prescribed dictionary. Inclusion of irrelevant kernels in the dictionary can deteriorate accuracy of MKL,…

Machine Learning · Computer Science 2021-02-10 Pouya M Ghari , Yanning Shen

iGraphMatch is an R package for finding corresponding vertices between two graphs, also known as graph matching. The package implements three categories of prevalent graph matching algorithms including relaxation-based, percolation-based,…

Computation · Statistics 2021-12-20 Zihuan Qiao , Daniel Sussman

This article deals with OLAP systems based on multidimensional model. The conceptual model we provide, represents data through a constellation (multi-facts) composed of several multi-hierarchy dimensions. In this model, data are displayed…

Databases · Computer Science 2010-05-20 Franck Ravat , Olivier Teste , Gilles Zurfluh

Neural networks are important tools for data-intensive analysis and are commonly applied to model non-linear relationships between dependent and independent variables. However, neural networks are usually seen as "black boxes" that offer…

Machine Learning · Computer Science 2023-05-05 J. Pizarroso , J. Portela , A. Muñoz

{\tt AbstractSimplicialComplexes.m2} is a computer algebra package written for the computer algebra system {\tt Macaulay2} \cite{M2}. It provides new infrastructure to work with abstract simplicial complexes and related homological…

Algebraic Geometry · Mathematics 2025-04-15 Nathan Grieve

The paper introduces the DIverse MultiPLEx Generalized Dot Product Graph (DIMPLE-GDPG) network model where all layers of the network have the same collection of nodes and follow the Generalized Dot Product Graph (GDPG) model. In addition,…

Methodology · Statistics 2023-03-27 Marianna Pensky , Yaxuan Wang

We present graph-based modeling abstractions to represent cyber-physical dependencies arising in complex systems. Specifically, we propose an algebraic graph abstraction to capture physical connectivity in complex optimization models and a…

Optimization and Control · Mathematics 2018-12-13 Jordan Jalving , Yankai Cao , Victor M. Zavala

Multiplex networks describe a large number of systems ranging from social networks to the brain. These multilayer structure encode information in their structure. This information can be extracted by measuring the correlations present in…

Disordered Systems and Neural Networks · Physics 2015-04-23 Giulia Menichetti , Daniel Remondini , Ginestra Bianconi

Censor-Hillel et al. [PODC'15] recently showed how to efficiently implement centralized algebraic algorithms for matrix multiplication in the congested clique model, a model of distributed computing that has received increasing attention in…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-10-05 François Le Gall

There is growing interest in multiplex networks where individual nodes take part in several layers of networks simultaneously. This is the case for example in social networks where each individual node has different kind of social ties or…

Disordered Systems and Neural Networks · Physics 2015-06-15 Ginestra Bianconi