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Correlation is not causation. As simple as this widely agreed-upon statement may seem, scientifically defining causality and using it to drive our modern biomedical research is immensely challenging. In this perspective, we attempt to…

Molecular Networks · Quantitative Biology 2024-01-19 Sebastian Lobentanzer , Pablo Rodriguez-Mier , Stefan Bauer , Julio Saez-Rodriguez

With the growth of natural language processing techniques and demand for improved software engineering efficiency, there is an emerging interest in translating intention from human languages to programming languages. In this survey paper,…

Software Engineering · Computer Science 2021-05-20 Celine Lee , Justin Gottschlich , Dan Roth

Compositionality is one of the fundamental abilities of the human reasoning process, that allows to decompose a complex problem into simpler elements. Such property is crucial also for neural networks, especially when aiming for a more…

Machine Learning · Computer Science 2025-06-19 Luigi Quarantiello , Andrea Cossu , Vincenzo Lomonaco

Interpreting the effects of variants within the human genome and proteome is essential for analysing disease risk, predicting medication response, and developing personalised health interventions. Due to the intrinsic similarities between…

Computation and Language · Computer Science 2025-03-17 Megha Hegde , Jean-Christophe Nebel , Farzana Rahman

Complex systems are difficult to study not only because they are nonlinear, multiscale, and often nonstationary, but because their scientifically relevant organization is often invisible at the level of individual components, pairwise…

Physics and Society · Physics 2026-03-30 Mark M. Bailey

Humans are remarkably flexible when understanding new sentences that include combinations of concepts they have never encountered before. Recent work has shown that while deep networks can mimic some human language abilities when presented…

Computation and Language · Computer Science 2021-10-20 Yen-Ling Kuo , Boris Katz , Andrei Barbu

Language understanding research is held back by a failure to relate language to the physical world it describes and to the social interactions it facilitates. Despite the incredible effectiveness of language processing models to tackle…

Complex systems have interested researchers across a broad range of fields for many years and as computing has become more accesible and feasible, it is now possible to simulate aspects of these systems. A major point of research is how…

Multiagent Systems · Computer Science 2019-01-16 George Hassan-Coring

Referential games offer a grounded learning environment for neural agents which accounts for the fact that language is functionally used to communicate. However, they do not take into account a second constraint considered to be fundamental…

Computation and Language · Computer Science 2021-02-02 Gautier Dagan , Dieuwke Hupkes , Elia Bruni

Natural language processing for programming aims to use NLP techniques to assist programming. It is increasingly prevalent for its effectiveness in improving productivity. Distinct from natural language, a programming language is highly…

Computation and Language · Computer Science 2023-08-08 Qingfu Zhu , Xianzhen Luo , Fang Liu , Cuiyun Gao , Wanxiang Che

Even when concepts similar to emergence have been used since antiquity, we lack an agreed definition. However, emergence has been identified as one of the main features of complex systems. Most would agree on the statement ``life is…

General Physics · Physics 2025-12-22 Carlos Gershenson

We present a method for combining multi-agent communication and traditional data-driven approaches to natural language learning, with an end goal of teaching agents to communicate with humans in natural language. Our starting point is a…

Computation and Language · Computer Science 2020-05-15 Angeliki Lazaridou , Anna Potapenko , Olivier Tieleman

Provenance, or information about the sources, derivation, custody or history of data, has been studied recently in a number of contexts, including databases, scientific workflows and the Semantic Web. Many provenance mechanisms have been…

Programming Languages · Computer Science 2010-04-20 James Cheney

The iterated learning model simulates the transmission of language from generation to generation in order to explore how the constraints imposed by language transmission facilitate the emergence of language structure. Despite each modelled…

Computation and Language · Computer Science 2026-01-07 Hyoyeon Lee , Seth Bullock , Conor Houghton

Pragmatics is core to natural language, enabling speakers to communicate efficiently with structures like ellipsis and anaphora that can shorten utterances without loss of meaning. These structures require a listener to interpret an…

Computation and Language · Computer Science 2023-08-17 Nicholas Edwards , Hannah Rohde , Henry Conklin

Human language defines the most complex outcomes of evolution. The emergence of such an elaborated form of communication allowed humans to create extremely structured societies and manage symbols at different levels including, among others,…

Physics and Society · Physics 2014-03-14 Ricard V. Solé , Luís F. Seoane

Grounded language models use external sources of information, such as knowledge graphs, to meet some of the general challenges associated with pre-training. By extending previous work on compositional generalization in semantic parsing, we…

Computation and Language · Computer Science 2024-06-10 Sondre Wold , Étienne Simon , Lucas Georges Gabriel Charpentier , Egor V. Kostylev , Erik Velldal , Lilja Øvrelid

Systematic compositionality is the ability to recombine meaningful units with regular and predictable outcomes, and it's seen as key to humans' capacity for generalization in language. Recent work has studied systematic compositionality in…

Computation and Language · Computer Science 2018-07-20 João Loula , Marco Baroni , Brenden M. Lake

When artificial agents are jointly trained to perform collaborative tasks using a communication channel, they develop opaque goal-oriented communication protocols. Good task performance is often considered sufficient evidence that…

Artificial Intelligence · Computer Science 2024-11-18 Rotem Ben Zion , Boaz Carmeli , Orr Paradise , Yonatan Belinkov

Programming languages are engineered languages that allow to instruct a machine and share algorithmic information; they have a great influence on the society since they underlie almost every information technology artefact, and they are at…

Programming Languages · Computer Science 2015-10-16 Silvia Crafa