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The importance of studying properties of networks is manifest in diverse fields ranging from biology, engineering, physics, chemistry, neuroscience, and medicine. The functionality of networks with regard to performance, throughput,…

Molecular Networks · Quantitative Biology 2015-03-27 Allen Tannenbaum , Chris Sander , Liangjia Zhu , Romeil Sandhu , Ivan Kolesov , Eduard Reznik , Yasin Senbabaoglu , Tryphon Georgiou

Networks are important representations in computer science to communicate structural aspects of a given system of interacting components. The evolution of a network has several topological properties that can provide us information on the…

Social and Information Networks · Computer Science 2020-04-30 Joao Pita Costa , Tihana Galinac Grbac

We show that connectivity within the high-dimensional recurrent layer of a reservoir network is crucial for its performance. To this end, we systematically investigate the impact of network connectivity on its performance, i.e., we examine…

Neural and Evolutionary Computing · Computer Science 2025-12-01 Shailendra K. Rathor , Martin Ziegler , Jörg Schumacher

We propose a method of generating different scale-free networks, which has several input parameters in order to adjust the structure, so that they can serve as a basis for computer simulation of real-world phenomena. The topological…

Social and Information Networks · Computer Science 2014-01-30 Imre Varga , András Németh , Gergely Kocsis

The Renormalization Group is crucial for understanding systems across scales, including complex networks. Renormalizing networks via network geometry, a framework in which their topology is based on the location of nodes in a hidden metric…

Physics and Society · Physics 2024-07-22 Jasper van der Kolk , Marián Boguñá , M. Ángeles Serrano

We study how the topology of a data set $M = M_a \cup M_b \subseteq \mathbb{R}^d$, representing two classes $a$ and $b$ in a binary classification problem, changes as it passes through the layers of a well-trained neural network, i.e., with…

Machine Learning · Computer Science 2020-04-14 Gregory Naitzat , Andrey Zhitnikov , Lek-Heng Lim

Network topology and its relationship to tie strengths may hinder or enhance the spreading of information in social networks. We study the correlations between tie strengths and topology in networks of scientific collaboration, and show…

Physics and Society · Physics 2012-01-12 Raj Kumar Pan , Jari Saramäki

Our goal is to infer the topology of a network when (i) we can send probes between sources and receivers at the edge of the network and (ii) intermediate nodes can perform simple network coding operations, i.e., additions. Our key intuition…

Networking and Internet Architecture · Computer Science 2013-02-07 Pegah Sattari , Christina Fragouli , Athina Markopoulou

Learning influence pathways of a network of dynamically related processes from observations is of considerable importance in many disciplines. In this article, influence networks of agents which interact dynamically via linear dependencies…

Systems and Control · Computer Science 2018-09-28 Saurav Talukdar , Deepjyoti Deka , Harish Doddi , Donatello Materassi , Misha Chertkov , Murti V. Salapaka

Constructing systems that exhibit time-scales much longer than those of the underlying components, as well as emergent dynamical and collective behavior, is a key goal in fields such as synthetic biology and materials self-assembly.…

Statistical Mechanics · Physics 2021-07-22 Evelyn Tang , Jaime Agudo-Canalejo , Ramin Golestanian

We present and analyze a topologically induced transition from ordered, synchronized to disordered dynamics in directed networks of oscillators. The analysis reveals where in the space of networks this transition occurs and its underlying…

Disordered Systems and Neural Networks · Physics 2007-05-23 Marc Timme

Geometric and structural constraints greatly restrict the selection of folds adapted by protein backbones, and yet, folded proteins show an astounding diversity in functionality. For structure to have any bearing on function, it is thus…

Biological Physics · Physics 2010-04-20 Brinda K. V. , Saraswathi Vishveshwara , Smitha Vishveshwara

Inferring network topology from dynamical observations is a fundamental problem pervading research on complex systems. Here, we present a simple, direct method to infer the structural connection topology of a network, given an observation…

Chaotic Dynamics · Physics 2015-05-19 Srinivas Gorur Shandilya , Marc Timme

Inferring the network topology from the dynamics is a fundamental problem with wide applications in geology, biology and even counter-terrorism. Based on the propagation process, we present a simple method to uncover the network topology.…

Physics and Society · Physics 2013-11-21 An Zeng

Network topology is a fundamental aspect of network science that allows us to gather insights into the complicated relational architectures of the world we inhabit. We provide a first specific study of neighbourhood degree sequences in…

Social and Information Networks · Computer Science 2019-06-11 Keith M. Smith

This paper addresses the problem of identifying the topology of an unknown, weighted, directed network running a consensus dynamics. We propose a methodology to reconstruct the network topology from the dynamic response when the system is…

Social and Information Networks · Computer Science 2013-03-18 Shahin Shahrampour , Victor M. Preciado

In real-world systems, the relationships and connections between components are highly complex. Real systems are often described as networks, where nodes represent objects in the system and edges represent relationships or connections…

Algebraic Topology · Mathematics 2024-06-24 Shen Zhang

The relation between network structure and dynamics is determinant for the behavior of complex systems in numerous domains. An important long-standing problem concerns the properties of the networks that optimize the dynamics with respect…

Adaptation and Self-Organizing Systems · Physics 2017-12-07 Takashi Nishikawa , Jie Sun , Adilson E. Motter

Many real-world complex networks contain a significant amount of structural redundancy, in which multiple vertices play identical topological roles. Such redundancy arises naturally from the simple growth processes which form and shape many…

Physics and Society · Physics 2020-08-05 Ben D. MacArthur , Rubén J. Sánchez-García

Flows are essential to transport resources over large distances. As soon as diffusion becomes time-limiting, flows are needed. Flows are key for the function of multiple human organs, from the blood vasculature to the lungs, the digestive…

Biological Physics · Physics 2025-10-28 Swarnavo Basu , Karen Alim