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We propose a new method to learn the structure of a Gaussian graphical model with finite sample false discovery rate control. Our method builds on the knockoff framework of Barber and Cand\`{e}s for linear models. We extend their approach…

Methodology · Statistics 2021-04-20 Jinzhou Li , Marloes H. Maathuis

Graph neural networks (GNNs) based methods have achieved impressive performance on node clustering task. However, they are designed on the homophilic assumption of graph and clustering on heterophilic graph is overlooked. Due to the lack of…

Social and Information Networks · Computer Science 2023-05-09 Erlin Pan , Zhao Kang

Graph similarity learning refers to calculating the similarity score between two graphs, which is required in many realistic applications, such as visual tracking, graph classification, and collaborative filtering. As most of the existing…

Machine Learning · Computer Science 2022-07-13 Di Jin , Luzhi Wang , Yizhen Zheng , Xiang Li , Fei Jiang , Wei Lin , Shirui Pan

The graph structure is a commonly used data storage mode, and it turns out that the low-dimensional embedded representation of nodes in the graph is extremely useful in various typical tasks, such as node classification, link prediction ,…

Social and Information Networks · Computer Science 2020-08-03 Xing Li , Wei Wei , Xiangnan Feng , Xue Liu , Zhiming Zheng

We explore the use of graph networks to deal with irregular-geometry detectors in the context of particle reconstruction. Thanks to their representation-learning capabilities, graph networks can exploit the full detector granularity, while…

Data Analysis, Statistics and Probability · Physics 2023-06-02 Shah Rukh Qasim , Jan Kieseler , Yutaro Iiyama , Maurizio Pierini

Although many techniques have been applied to matrix factorization (MF), they may not fully exploit the feature structure. In this paper, we incorporate the grouping effect into MF and propose a novel method called Robust Matrix…

Machine Learning · Computer Science 2021-07-09 Haiyan Jiang , Shuyu Li , Luwei Zhang , Haoyi Xiong , Dejing Dou

In this paper we propose an adaptive approach for clustering and visualization of data by an orthogonalization process. Starting with the data points being represented by a Markov process using the diffusion map framework, the method…

Machine Learning · Statistics 2022-07-26 Martin Ryner , Johan Karlsson

Graph foundation models (GFMs), pretrained on massive graph data, have transformed graph machine learning by supporting general-purpose reasoning across diverse graph tasks and domains. Existing GFMs pretrained with fixed-hop subgraph…

Machine Learning · Computer Science 2026-05-12 Haokun Liu , Zezhong Ding , Xike Xie

We present a novel framework based on optimal transport for the challenging problem of comparing graphs. Specifically, we exploit the probabilistic distribution of smooth graph signals defined with respect to the graph topology. This allows…

Machine Learning · Computer Science 2019-12-09 Hermina Petric Maretic , Mireille EL Gheche , Giovanni Chierchia , Pascal Frossard

We introduce a general framework for analyzing data modeled as parameterized families of networks. Building on a Gromov-Wasserstein variant of optimal transport, we define a family of parameterized Gromov-Wasserstein distances for comparing…

Machine Learning · Statistics 2025-09-29 Mario Gómez , Guanqun Ma , Tom Needham , Bei Wang

In recent years, numerous graph generative models (GGMs) have been proposed. However, evaluating these models remains a considerable challenge, primarily due to the difficulty in extracting meaningful graph features that accurately…

Machine Learning · Computer Science 2025-03-18 Chengen Wang , Murat Kantarcioglu

The Gromov-Wasserstein (GW) distance has gained increasing interest in the machine learning community in recent years, as it allows for the comparison of measures in different metric spaces. To overcome the limitations imposed by the equal…

Machine Learning · Computer Science 2025-03-28 Yikun Bai , Rocio Diaz Martin , Abihith Kothapalli , Hengrong Du , Xinran Liu , Soheil Kolouri

We propose a novel method to optimize the structure of factor graphs for graph-based inference. As an example inference task, we consider symbol detection on linear inter-symbol interference channels. The factor graph framework has the…

Information Theory · Computer Science 2023-06-02 Lukas Rapp , Luca Schmid , Andrej Rode , Laurent Schmalen

The article introduces a new method for applying Quantum Clustering to graph structures. Quantum Clustering (QC) is a novel density-based unsupervised learning method that determines cluster centers by constructing a potential function. In…

Machine Learning · Computer Science 2025-01-17 Zhe Wang , ZhiJie He , Ding Liu

Self-supervised learning has become a key method for training deep learning models when labeled data is scarce or unavailable. While graph machine learning holds great promise across various domains, the design of effective pretext tasks…

Machine Learning · Computer Science 2025-03-03 Amadou S. Sangare , Nicolas Dunou , Jhony H. Giraldo , Fragkiskos D. Malliaros

Gaussian graphical models emerge in a wide range of fields. They model the statistical relationships between variables as a graph, where an edge between two variables indicates conditional dependence. Unfortunately, well-established…

Machine Learning · Statistics 2024-01-19 Taulant Koka , Jasin Machkour , Michael Muma

Molecular graph generation (MGG) is essentially a multi-class generative task, aimed at predicting categories of atoms and bonds under strict chemical and structural constraints. However, many prevailing diffusion paradigms learn to regress…

Machine Learning · Computer Science 2026-01-21 Yida Xiong , Jiameng Chen , Kun Li , Hongzhi Zhang , Xiantao Cai , Jia Wu , Wenbin Hu

As a valid metric of metric-measure spaces, Gromov-Wasserstein (GW) distance has shown the potential for matching problems of structured data like point clouds and graphs. However, its application in practice is limited due to the high…

Machine Learning · Computer Science 2023-01-10 Mengyu Li , Jun Yu , Hongteng Xu , Cheng Meng

Graph partitioning is the problem of dividing the nodes of a graph into balanced partitions while minimizing the edge cut across the partitions. Due to its combinatorial nature, many approximate solutions have been developed, including…

Machine Learning · Computer Science 2019-03-05 Azade Nazi , Will Hang , Anna Goldie , Sujith Ravi , Azalia Mirhoseini

We propose a Bayesian approximate inference method for learning the dependence structure of a Gaussian graphical model. Using pseudo-likelihood, we derive an analytical expression to approximate the marginal likelihood for an arbitrary…

Machine Learning · Statistics 2017-04-13 Janne Leppä-aho , Johan Pensar , Teemu Roos , Jukka Corander
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