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Traditional molecule generation methods often rely on sequence- or graph-based representations, which can limit their expressive power or require complex permutation-equivariant architectures. This paper introduces a novel paradigm for…

Machine Learning · Computer Science 2025-02-18 Van Khoa Nguyen , Maciej Falkiewicz , Giangiacomo Mercatali , Alexandros Kalousis

Vision-Transformers (ViTs) and Convolutional neural networks (CNNs) are widely used Deep Neural Networks (DNNs) for classification task. These model architectures are dependent on the number of classes in the dataset it was trained on. Any…

Computer Vision and Pattern Recognition · Computer Science 2023-05-15 Shakti N. Wadekar , Eugenio Culurciello

Although deep convolutional neural networks(CNNs) have achieved remarkable results on object detection and segmentation, pre- and post-processing steps such as region proposals and non-maximum suppression(NMS), have been required. These…

Computer Vision and Pattern Recognition · Computer Science 2016-05-12 Eunbyung Park , Alexander C. Berg

Construction of a scaffold structure that supports a desired motif, conferring protein function, shows promise for the design of vaccines and enzymes. But a general solution to this motif-scaffolding problem remains open. Current…

Biomolecules · Quantitative Biology 2023-03-21 Brian L. Trippe , Jason Yim , Doug Tischer , David Baker , Tamara Broderick , Regina Barzilay , Tommi Jaakkola

Neural networks are often benchmarked using standard datasets such as MNIST, FashionMNIST, or other variants of MNIST, which, while accessible, are limited to generic classes such as digits or clothing items. For researchers working on…

Machine Learning · Computer Science 2025-07-17 Pouya Shaeri , Arash Karimi , Ariane Middel

This study focuses on automatic skin cancer detection using a Meta-learning approach for dermoscopic images. The aim of this study is to explore the benefits of the generalization of the knowledge extracted from non-medical data in the…

Computer Vision and Pattern Recognition · Computer Science 2021-04-23 Sara I. Garcia

Convolutional neural network (CNN) approaches available in the current literature are designed to work primarily with low-resolution images. When applied on very large images, challenges related to GPU memory, smaller receptive field than…

Computer Vision and Pattern Recognition · Computer Science 2022-06-28 Deepak K. Gupta , Udbhav Bamba , Abhishek Thakur , Akash Gupta , Suraj Sharan , Ertugrul Demir , Dilip K. Prasad

The MNIST dataset has become a standard benchmark for learning, classification and computer vision systems. Contributing to its widespread adoption are the understandable and intuitive nature of the task, its relatively small size and…

Computer Vision and Pattern Recognition · Computer Science 2017-03-02 Gregory Cohen , Saeed Afshar , Jonathan Tapson , André van Schaik

Deep Neural Networks (DNNs), with its promising performance, are being increasingly used in safety critical applications such as autonomous driving, cancer detection, and secure authentication. With growing importance in deep learning,…

Machine Learning · Computer Science 2019-11-19 Senthil Mani , Anush Sankaran , Srikanth Tamilselvam , Akshay Sethi

Molecular representation learning is pivotal for various molecular property prediction tasks related to drug discovery. Robust and accurate benchmarks are essential for refining and validating current methods. Existing molecular property…

Chemical Physics · Physics 2024-06-27 Shikun Feng , Jiaxin Zheng , Yinjun Jia , Yanwen Huang , Fengfeng Zhou , Wei-Ying Ma , Yanyan Lan

As deep learning models grow in complexity and the volume of training data increases, reducing storage and computational costs becomes increasingly important. Dataset distillation addresses this challenge by synthesizing a compact set of…

Computer Vision and Pattern Recognition · Computer Science 2025-05-20 Zhe Li , Sarah Cechnicka , Cheng Ouyang , Katharina Breininger , Peter Schüffler , Bernhard Kainz

Recent advances in machine learning have enabled generative models for both optimization and de novo generation of drug candidates with desired properties. Previous generative models have focused on producing SMILES strings or 2D molecular…

Quantitative Methods · Quantitative Biology 2021-11-25 Michael Arcidiacono , David Ryan Koes

Machine learning in drug discovery has been focused on virtual screening of molecular libraries using discriminative models. Generative models are an entirely different approach that learn to represent and optimize molecules in a continuous…

Quantitative Methods · Quantitative Biology 2020-11-17 Matthew Ragoza , Tomohide Masuda , David Ryan Koes

Computer vision techniques have immense potential for materials design applications. In this work, we introduce an integrated and general-purpose AtomVision library that can be used to generate, curate scanning tunneling microscopy (STM)…

Materials Science · Physics 2023-03-06 Kamal Choudhary , Ramya Gurunathan , Brian DeCost , Adam Biacchi

Improving the detailed understanding of the underlying properties and functions of biomolecules has recently attracted growing interest, enabled by the possibility of real-space imaging of single, intact macromolecules using Scanning…

Mesoscale and Nanoscale Physics · Physics 2026-03-10 Tim J. Seifert , Dhaneesh Kumar , Markus Etzkorn , Stephan Rauschenbach , Klaus Kern , Kelvin Anggara , Uta Schlickum

We pose that microscopy offers an ideal real-world experimental environment for the development and deployment of active Bayesian and reinforcement learning methods. Indeed, the tremendous progress achieved by machine learning (ML) and…

Disordered Systems and Neural Networks · Physics 2022-10-14 Sergei V. Kalinin , Rama Vasudevan , Yongtao Liu , Ayana Ghosh , Kevin Roccapriore , Maxim Ziatdinov

Flow-Imaging Microscopy (FIM) is commonly used in both academia and industry to characterize subvisible particles (those $\le 25 \mu m$ in size) in protein therapeutics. Pharmaceutical companies are required to record vast volumes of FIM…

Quantitative Methods · Quantitative Biology 2017-09-04 Christopher P. Calderon , Austin L. Daniels , Theodore W. Randolph

Recent advances in multimodal learning have achieved remarkable success across diverse vision-language tasks. However, such progress heavily relies on large-scale image-text datasets, making training costly and inefficient. Prior efforts in…

Computer Vision and Pattern Recognition · Computer Science 2026-03-02 Junhyeok Choi , Sangwoo Mo , Minwoo Chae

Molecular Dynamics (MD) simulation is widely used to analyze the properties of molecules and materials. Most practical applications, such as comparison with experimental measurements, designing drug molecules, or optimizing materials, rely…

Chemical Physics · Physics 2018-12-20 Frank Noé

MVImgNet is a large-scale dataset that contains multi-view images of ~220k real-world objects in 238 classes. As a counterpart of ImageNet, it introduces 3D visual signals via multi-view shooting, making a soft bridge between 2D and 3D…

Computer Vision and Pattern Recognition · Computer Science 2024-12-03 Xiaoguang Han , Yushuang Wu , Luyue Shi , Haolin Liu , Hongjie Liao , Lingteng Qiu , Weihao Yuan , Xiaodong Gu , Zilong Dong , Shuguang Cui