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Correlation clustering is a widely-used approach for clustering large data sets based only on pairwise similarity information. In recent years, there has been a steady stream of better and better classical algorithms for approximating this…

Data Structures and Algorithms · Computer Science 2025-04-08 Sepehr Assadi , Sanjeev Khanna , Aaron Putterman

We study the construction of $d$-deletion-correcting binary codes by formulating the problem as a Maximum Clique Problem (MCP). In this formulation, vertices represent candidate codewords and edges connect pairs whose longest common…

Information Theory · Computer Science 2026-02-10 Aniruddh Pandav , Rajshekhar V Bhat

Quasi-cliques are dense incomplete subgraphs of a graph that generalize the notion of cliques. Enumerating quasi-cliques from a graph is a robust way to detect densely connected structures with applications to bio-informatics and social…

Data Structures and Algorithms · Computer Science 2020-02-04 Seyed-Vahid Sanei-Mehri , Apurba Das , Srikanta Tirthapura

A (unit) disk graph is the intersection graph of closed (unit) disks in the plane. Almost three decades ago, an elegant polynomial-time algorithm was found for \textsc{Maximum Clique} on unit disk graphs [Clark, Colbourn, Johnson; Discrete…

Computational Geometry · Computer Science 2018-03-01 Édouard Bonnet , Panos Giannopoulos , Eun Jung Kim , Paweł Rzążewski , Florian Sikora

Given an undirected graph $G = (V,E)$ with a set $V$ of vertices and a set $E$ of edges, the minimum sum coloring problem (MSCP) is to find a legal vertex coloring of $G$, using colors represented by natural numbers $1, 2, . . .$ such that…

Discrete Mathematics · Computer Science 2013-03-28 Qinghua Wu , Jin-Kao Hao

Considering a clique as a conservative definition of community structure, we examine how graph partitioning algorithms interact with cliques. Many popular community-finding algorithms partition the entire graph into non-overlapping…

Physics and Society · Physics 2012-05-15 Fergal Reid , Aaron McDaid , Neil Hurley

We present a new parallel algorithm for $k$-clique counting/listing that has polylogarithmic span (parallel time) and is work-efficient (matches the work of the best sequential algorithm) for sparse graphs. Our algorithm is based on…

Data Structures and Algorithms · Computer Science 2021-07-19 Jessica Shi , Laxman Dhulipala , Julian Shun

The 'exact subgraph' approach was recently introduced as a hierarchical scheme to get increasingly tight semidefinite programming relaxations of several NP-hard graph optimization problems. Solving these relaxations is a computational…

Optimization and Control · Mathematics 2019-08-09 Elisabeth Gaar , Franz Rendl

Mining cohesive subgraphs in attributed graphs is an essential problem in the domain of graph data analysis. The integration of fairness considerations significantly fuels interest in models and algorithms for mining fairness-aware cohesive…

Databases · Computer Science 2023-12-08 Qi Zhang , Rong-Hua Li , Zifan Zheng , Hongchao Qin , Ye Yuan , Guoren Wang

Benders decomposition is a widely used method for solving large optimization problems, but its performance is often hindered by the repeated solution of subproblems. We propose a flexible and modular algorithmic framework for accelerating…

Optimization and Control · Mathematics 2025-08-05 Parth Brahmbhatt , David L. Cole , Victor M. Zavala , Styliani Avraamidou

The maximum clique (MC) problem is a challenging graph mining problem which, due to its NP-hard nature, can take a substantial amount of execution time. The MC problem is dominated by set intersection operations similar to Maximal Clique…

Data Structures and Algorithms · Computer Science 2025-09-29 Hans Vandierendonck

A novel approach to complex problems has been previously applied to graph classification and the graph equivalence problem. Here we apply it to the NP complete problem of finding the largest perfect clique within a graph $G$.

Condensed Matter · Physics 2007-05-23 Vladimir Gudkov , Shmuel Nussinov , Zohar Nussinov

We define an approach to identify overlapping communities in multiplex networks, extending the popular clique percolation method for simple graphs. The extension requires to rethink the basic concepts on which the clique percolation…

Social and Information Networks · Computer Science 2016-03-08 Nazanin Afsarmanesh , Matteo Magnani

Co-clustering simultaneously clusters rows and columns, revealing more fine-grained groups. However, existing co-clustering methods suffer from poor scalability and cannot handle large-scale data. This paper presents a novel and scalable…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-03-20 Zihan Wu , Zhaoke Huang , Hong Yan

Local graph clustering is an important algorithmic technique for analysing massive graphs, and has been widely applied in many research fields of data science. While the objective of most (local) graph clustering algorithms is to find a…

Data Structures and Algorithms · Computer Science 2021-06-10 Peter Macgregor , He Sun

The matching problem between two adjacency matrices can be formulated as the NP-hard quadratic assignment problem (QAP). Previous work on semidefinite programming (SDP) relaxations to the QAP have produced solutions that are often tight in…

Optimization and Control · Mathematics 2017-03-29 Jose F. S. Bravo Ferreira , Yuehaw Khoo , Amit Singer

Finding cohesive subgraphs in a large graph has many important applications, such as community detection and biological network analysis. Clique is often a too strict cohesive structure since communities or biological modules rarely form as…

Data Structures and Algorithms · Computer Science 2024-06-11 Qihao Cheng , Da Yan , Tianhao Wu , Lyuheng Yuan , Ji Cheng , Zhongyi Huang , Yang Zhou

Biclustering, also called co-clustering, block clustering, or two-way clustering, involves the simultaneous clustering of both the rows and columns of a data matrix into distinct groups, such that the rows and columns within a group display…

Optimization and Control · Mathematics 2024-12-06 Antonio M. Sudoso

In this note, we investigate listing cliques of arbitrary sizes in bandwidth-limited, dynamic networks. The problem of detecting and listing triangles and cliques was originally studied in great detail by Bonne and Censor-Hillel (ICALP…

Data Structures and Algorithms · Computer Science 2022-12-27 Quanquan C. Liu

Considering higher-order interactions allows for a more comprehensive understanding of network structures beyond simple pairwise connections. While leveraging all cliques in a network to handle higher-order interactions is intuitive, it…

Social and Information Networks · Computer Science 2025-09-30 Eunho Koo , Tongseok Lim
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