Related papers: Leveraging Dependency Forest for Neural Medical Re…
Based on decision trees, many fields have arguably made tremendous progress in recent years. In simple words, decision trees use the strategy of "divide-and-conquer" to divide the complex problem on the dependency between input features and…
Many state-of-art neural models designed for monotonicity reasoning perform poorly on downward inference. To address this shortcoming, we developed an attentive tree-structured neural network. It consists of a tree-based…
We present simple BERT-based models for relation extraction and semantic role labeling. In recent years, state-of-the-art performance has been achieved using neural models by incorporating lexical and syntactic features such as…
Relation extraction task is a crucial and challenging aspect of Natural Language Processing. Several methods have surfaced as of late, exhibiting notable performance in addressing the task; however, most of these approaches rely on vast…
Relation extraction has been widely studied to extract new relational facts from open corpus. Previous relation extraction methods are faced with the problem of wrong labels and noisy data, which substantially decrease the performance of…
Sequence-based neural networks show significant sensitivity to syntactic structure, but they still perform less well on syntactic tasks than tree-based networks. Such tree-based networks can be provided with a constituency parse, a…
In creating sentence embeddings for Natural Language Inference (NLI) tasks, using transformer-based models like BERT leads to high accuracy, but require hundreds of millions of parameters. These models take in sentences as a sequence of…
We use reinforcement learning to learn tree-structured neural networks for computing representations of natural language sentences. In contrast with prior work on tree-structured models in which the trees are either provided as input or…
Knowledge discovery is hindered by the increasing volume of publications and the scarcity of extensive annotated data. To tackle the challenge of information overload, it is essential to employ automated methods for knowledge extraction and…
Interpretability has become incredibly important as machine learning is increasingly used to inform consequential decisions. We propose to construct global explanations of complex, blackbox models in the form of a decision tree…
Objective: Disease knowledge graphs are a way to connect, organize, and access disparate information about diseases with numerous benefits for artificial intelligence (AI). To create knowledge graphs, it is necessary to extract knowledge…
Relation extraction is a type of information extraction task that recognizes semantic relationships between entities in a sentence. Many previous studies have focused on extracting only one semantic relation between two entities in a single…
This paper presents our participation in the AGAC Track from the 2019 BioNLP Open Shared Tasks. We provide a solution for Task 3, which aims to extract "gene - function change - disease" triples, where "gene" and "disease" are mentions of…
This work focuses on analyzing the form and extent of syntactic abstraction captured by BERT by extracting labeled dependency trees from self-attentions. Previous work showed that individual BERT heads tend to encode particular dependency…
Knowledge graphs are widely used as a typical resource to provide answers to factoid questions. In simple question answering over knowledge graphs, relation extraction aims to predict the relation of a factoid question from a set of…
A variety of methods have been proposed for interpreting nodes in deep neural networks, which typically involve scoring nodes at lower layers with respect to their effects on the output of higher-layer nodes (where lower and higher layers…
Automated entity relation extraction (RE) from literature provides an important source for constructing biomedical database, which is more efficient and extensible than manual curation. However, existing RE models usually ignore the…
This article presents a stochastic corpus-based model for generating natural language text. Our model first encodes dependency relations from training data through a feature set, then concatenates these features to produce a new dependency…
Diseases involve complex processes and modifications to the cellular machinery. The gene expression profile of the affected cells contains characteristic patterns linked to a disease. Hence, biological knowledge pertaining to a disease can…
With the explosive growth of biomedical literature, designing automatic tools to extract information from the literature has great significance in biomedical research. Recently, transformer-based BERT models adapted to the biomedical domain…