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Lots of learning tasks require dealing with graph data which contains rich relation information among elements. Modeling physics systems, learning molecular fingerprints, predicting protein interface, and classifying diseases demand a model…

Machine Learning · Computer Science 2021-10-07 Jie Zhou , Ganqu Cui , Shengding Hu , Zhengyan Zhang , Cheng Yang , Zhiyuan Liu , Lifeng Wang , Changcheng Li , Maosong Sun

Graph neural networks (GNNs) have been widely used in representation learning on graphs and achieved state-of-the-art performance in tasks such as node classification and link prediction. However, most existing GNNs are designed to learn…

Machine Learning · Computer Science 2020-02-06 Seongjun Yun , Minbyul Jeong , Raehyun Kim , Jaewoo Kang , Hyunwoo J. Kim

The knowledge-grounded dialogue task aims to generate responses that convey information from given knowledge documents. However, it is a challenge for the current sequence-based model to acquire knowledge from complex documents and…

Computation and Language · Computer Science 2024-05-17 Yizhe Yang , Heyan Huang , Yang Gao , Jiawei Li and

Graphs are able to model interconnected entities in many online services, supporting a wide range of applications on the Web. This raises an important question: How can we train a graph foundational model on multiple source domains and…

Computation and Language · Computer Science 2025-04-15 Xingtong Yu , Zechuan Gong , Chang Zhou , Yuan Fang , Hui Zhang

Transition-based dependency parsers often need sequences of local shift and reduce operations to produce certain attachments. Correct individual decisions hence require global information about the sentence context and mistakes cause error…

Computation and Language · Computer Science 2017-05-15 Peng Qi , Christopher D. Manning

In recent years, we have seen a colossal effort in pre-training multilingual text encoders using large-scale corpora in many languages to facilitate cross-lingual transfer learning. However, due to typological differences across languages,…

Computation and Language · Computer Science 2021-06-07 Wasi Uddin Ahmad , Haoran Li , Kai-Wei Chang , Yashar Mehdad

Can we model Non-Euclidean graphs as pure language or even Euclidean vectors while retaining their inherent information? The Non-Euclidean property have posed a long term challenge in graph modeling. Despite recent graph neural networks and…

Machine Learning · Computer Science 2024-05-30 Zhangyang Gao , Daize Dong , Cheng Tan , Jun Xia , Bozhen Hu , Stan Z. Li

We show that standard Transformers without graph-specific modifications can lead to promising results in graph learning both in theory and practice. Given a graph, we simply treat all nodes and edges as independent tokens, augment them with…

Machine Learning · Computer Science 2022-10-25 Jinwoo Kim , Tien Dat Nguyen , Seonwoo Min , Sungjun Cho , Moontae Lee , Honglak Lee , Seunghoon Hong

In this paper, we present an approach to improve the accuracy of a strong transition-based dependency parser by exploiting dependency language models that are extracted from a large parsed corpus. We integrated a small number of features…

Computation and Language · Computer Science 2017-09-01 Juntao Yu , Bernd Bohnet

Dynamic graph embedding has emerged as a very effective technique for addressing diverse temporal graph analytic tasks (i.e., link prediction, node classification, recommender systems, anomaly detection, and graph generation) in various…

Machine Learning · Computer Science 2023-12-27 Alan John Varghese , Aniruddha Bora , Mengjia Xu , George Em Karniadakis

Graph neural networks (GNNs) have brought revolutionary advancements to the field of link prediction (LP), providing powerful tools for mining potential relationships in graphs. However, existing methods face challenges when dealing with…

Machine Learning · Computer Science 2025-12-30 Huashen Lu , Wensheng Gan , Guoting Chen , Zhichao Huang , Philip S. Yu

Standard transformer-based language models, while powerful for general text, often struggle with the fine-grained syntax and entity relationships in complex technical, engineering documents. To address this, we propose the Contextual Graph…

Computation and Language · Computer Science 2025-08-05 Karan Reddy , Mayukha Pal

Learning the dependence structure among variables in complex systems is a central problem across medical, natural, and social sciences. These structures can be naturally represented by graphs, and the task of inferring such graphs from data…

Methodology · Statistics 2026-04-02 Lucas Kook , Søren Wengel Mogensen

Graph neural networks (GNNs) largely rely on the message-passing paradigm, where nodes iteratively aggregate information from their neighbors. Yet, standard message passing neural networks (MPNNs) face well-documented theoretical and…

Machine Learning · Computer Science 2026-05-15 Juan Amboage , Ernst Röell , Patrick Schnider , Bastian Rieck

We show that viewing graphs as sets of node features and incorporating structural and positional information into a transformer architecture is able to outperform representations learned with classical graph neural networks (GNNs). Our…

Machine Learning · Computer Science 2021-06-11 Grégoire Mialon , Dexiong Chen , Margot Selosse , Julien Mairal

Pretrained language models (PLM) have recently advanced graph-to-text generation, where the input graph is linearized into a sequence and fed into the PLM to obtain its representation. However, efficiently encoding the graph structure in…

Computation and Language · Computer Science 2021-09-09 Leonardo F. R. Ribeiro , Yue Zhang , Iryna Gurevych

Spatio-temporal graph neural networks have proven efficacy in capturing complex dependencies for urban computing tasks such as forecasting and kriging. Yet, their performance is constrained by the reliance on extensive data for training on…

Machine Learning · Computer Science 2024-11-08 Junfeng Hu , Xu Liu , Zhencheng Fan , Yifang Yin , Shili Xiang , Savitha Ramasamy , Roger Zimmermann

Recognizing and categorizing lexical collocations in context is useful for language learning, dictionary compilation and downstream NLP. However, it is a challenging task due to the varying degrees of frozenness lexical collocations…

Computation and Language · Computer Science 2022-05-24 Luis Espinosa-Anke , Alexander Shvets , Alireza Mohammadshahi , James Henderson , Leo Wanner

Code embedding is a keystone in the application of machine learning on several Software Engineering (SE) tasks. To effectively support a plethora of SE tasks, the embedding needs to capture program syntax and semantics in a way that is…

Software Engineering · Computer Science 2022-01-24 Wei Ma , Mengjie Zhao , Ezekiel Soremekun , Qiang Hu , Jie Zhang , Mike Papadakis , Maxime Cordy , Xiaofei Xie , Yves Le Traon

We introduce a novel architecture for dependency parsing: \emph{stack-pointer networks} (\textbf{\textsc{StackPtr}}). Combining pointer networks~\citep{vinyals2015pointer} with an internal stack, the proposed model first reads and encodes…

Computation and Language · Computer Science 2018-05-04 Xuezhe Ma , Zecong Hu , Jingzhou Liu , Nanyun Peng , Graham Neubig , Eduard Hovy