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This paper studies the problem of receiver modeling in molecular communication systems. We consider the diffusive molecular communication channel between a transmitter nano-machine and a receiver nano-machine in a fluid environment. The…

Emerging Technologies · Computer Science 2016-10-04 Arman Ahmadzadeh , Hamidreza Arjmandi , Andreas Burkovski , Robert Schober

Cells use surface receptors to estimate the concentration of external ligands. Limits on the accuracy of such estimations have been well studied for pairs of ligand and receptor species. However, the environment typically contains many…

Molecular Networks · Quantitative Biology 2015-06-02 Vijay Singh , Ilya Nemenman

Intercellular signaling has an important role in organism development, but not all communication occurs using the same mechanism. Here, we analyze the energy efficiency of intercellular signaling by two canonical mechanisms: diffusion of…

Quantitative Methods · Quantitative Biology 2022-11-30 Hyunjoong Kim , Yoichiro Mori , Joshua B. Plotkin

This study focuses on addressing the inverse source problem associated with the parabolic equation. We rely on sparse boundary flux data as our measurements, which are acquired from a restricted section of the boundary. While it has been…

Numerical Analysis · Mathematics 2023-10-18 Guang Lin , Na Ou , Zecheng Zhang , Zhidong Zhang

This letter develops a one-dimensional (1D) diffusion-based molecular communication system to analyze channel responses between a single transmitter (TX) and two fully-absorbing receivers (RXs). Incorporating molecular degradation in the…

Emerging Technologies · Computer Science 2020-03-24 Xinyu Huang , Yuting Fang , Adam Noel , Nan Yang

Reconstructing the unknown spectrum of a given X-ray source is a common problem in a wide range of X-ray imaging tasks. For high-energy sources, transmission measurements are mostly used to recover the X-ray spectrum, as a solution to an…

Applied Physics · Physics 2023-07-13 Arthur Walker , Alexandre Friou , Kevin Ginsburger

Diffusion of molecules in cells plays an important role in providing a biological reaction on the surface by finding a target on the membrane surface. The water retardation (slow diffusion) near the target assists the searching molecules to…

Statistical Mechanics · Physics 2015-09-02 Takuma Akimoto , Kazuhiko Seki

Diffusion with stochastic resetting, instantaneous returns of a diffusing particle to a reference point, creates a stationary probability distribution. The paradigm is extended here to a doubly stochastic protocol in which the resetting…

Statistical Mechanics · Physics 2025-10-01 Maxence Arutkin , Shlomi Reuveni

Source extension is a reformulation of inverse problems in wave propagation, that at least in some cases leads to computationally tractable iterative solution methods. The core subproblem in all source extension methods is the solution of a…

Numerical Analysis · Mathematics 2022-04-01 William W. Symes

Nonlinear lens distortion rectification is a common first step in image processing applications where the assumption of a linear camera model is essential. For rectifying the lens distortion, forward distortion model needs to be known.…

Computer Vision and Pattern Recognition · Computer Science 2017-07-05 Burak Benligiray , Cihan Topal

Diffusion models are important in tissue engineering as they enable an understanding of molecular delivery to cells in tissue constructs. As three-dimensional (3D) tissue constructs become larger, more intricate, and more clinically…

Tissues and Organs · Quantitative Biology 2015-12-22 Richard J. McMurtrey

Molecular structure generation is a fundamental problem that involves determining the 3D positions of molecules' constituents. It has crucial biological applications, such as molecular docking, protein folding, and molecular design. Recent…

Machine Learning · Computer Science 2025-08-27 Wenyin Zhou , Christopher Iliffe Sprague , Vsevolod Viliuga , Matteo Tadiello , Arne Elofsson , Hossein Azizpour

In this paper, we study the problem of reconstructing a 3D point source model from a set of 2D projections at unknown view angles. Our method obviates the need to recover the projection angles by extracting a set of rotation-invariant…

Signal Processing · Electrical Eng. & Systems 2020-03-24 Mona Zehni , Shuai Huang , Ivan Dokmanić , Zhizhen Zhao

Diffusion-based generative models in SE(3)-invariant space have demonstrated promising performance in molecular conformation generation, but typically require solving stochastic differential equations (SDEs) with thousands of update steps.…

Computational Physics · Physics 2024-02-02 Zihan Zhou , Ruiying Liu , Tianshu Yu

Diffusion-based models have shown great promise in molecular generation but often require a large number of sampling steps to generate valid samples. In this paper, we introduce a novel Straight-Line Diffusion Model (SLDM) to tackle this…

Machine Learning · Computer Science 2025-06-10 Yuyan Ni , Shikun Feng , Haohan Chi , Bowen Zheng , Huan-ang Gao , Wei-Ying Ma , Zhi-Ming Ma , Yanyan Lan

Three particles floating on a fluid surface define a triangle. The aim of this paper is to characterise the shape of the triangle, defined by two of its angles, as the three vertices are subject to a complex or turbulent motion. We consider…

Chaotic Dynamics · Physics 2015-06-15 Alain Pumir , Michael Wilkinson

Here we characterized an information measure for cell polarity that applies to non-motile cells responding to a chemical gradient. The central idea is that polarization represents information about the direction of the gradient. We applied…

Cell Behavior · Quantitative Biology 2025-04-14 Tau-Mu Yi

Triangles are everywhere in the virtual world. The surface of nearly every graphical object is saved as a triangular mesh on a computer. Light effects and movements of virtual objects are computed on the basis of triangulations. Besides…

History and Overview · Mathematics 2023-07-27 Dimitris Vartziotis , Doris Bohnet

We study two cases of acoustic source localization in a reverberant room, from a number of point-wise narrowband measurements. In the first case, the room is perfectly known. We show that using a sparse recovery algorithm with a dictionary…

Information Theory · Computer Science 2013-07-19 Gilles Chardon , Laurent Daudet

Gradient sensing requires at least two measurements at different points in space. These measurements must then be communicated to a common location to be compared, which is unavoidably noisy. While much is known about the limits of…

Molecular Networks · Quantitative Biology 2016-04-27 Andrew Mugler , Andre Levchenko , Ilya Nemenman
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