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Recovering the position of a source from the fluxes of diffusing particles through small receptors allows a biological cell to determine its relative position, spatial localization and guide it to a final target. However, how a source can…

Cell Behavior · Quantitative Biology 2017-05-09 Uli Dobramysl , David Holcman

We develop a computational approach to locate the source of a steady-state gradient of diffusing particles from the fluxes through narrow windows distributed either on the boundary of a three dimensional half-space or on a sphere. This…

Statistical Mechanics · Physics 2020-01-07 U. Dobramysl , D. Holcman

This work localizes a molecular source in a diffusion based molecular communication (DbMC) system via a set of passive sensors and a fusion center. Molecular source localization finds its applications in future healthcare systems, including…

Signal Processing · Electrical Eng. & Systems 2019-07-10 Henry Ernest Baidoo-Williams , Muhammad Mahboob Ur Rahman , Qammer Hussain Abbasi

Is it possible to recover the position of a source from the steady-state fluxes of Brownian particles to small absorbing windows located on the boundary of a domain? To address this question, we develop a numerical procedure to avoid…

Cell Behavior · Quantitative Biology 2017-12-06 Ulrich Dobramysl , David Holcman

Spatial information from cell-surface receptors is crucial for processes that require signal processing and sensing of the environment. Here, we investigate the optimal placement of such receptors through a theoretical model that minimizes…

Biological Physics · Physics 2025-04-17 Albert Alonso , Robert G. Endres , Julius B. Kirkegaard

Chemotactic cells of eukaryotic organisms are able to accurately sense shallow chemical concentration gradients using cell-surface receptors. This sensing ability is remarkable as cells must be able to spatially resolve small fractional…

Cell Behavior · Quantitative Biology 2009-06-22 Robert G. Endres , Ned S. Wingreen

We describe a general method to determine the location of a point source of waves relative to a two-dimensional active pixel detector. Based on the inherent structural sensitivity of crystalline sensor materials, characteristic detector…

Instrumentation and Detectors · Physics 2017-04-26 Stefano Vespucci , Carol Trager-Cowan , Dzmitry Maneuski , Val O'Shea , Aimo Winkelmann

How cells reliably infer information about their environment is a fundamentally important question. While sensing and signaling generally start with cell-surface receptors, the degree of accuracy with which a cell can measure external…

Biological Physics · Physics 2016-01-20 Gerardo Aquino , Ned S. Wingreen , Robert G. Endres

We investigate single-cell directional sensing from diffusing chemoattractant signals released by a localized source. We focus on the low-concentration regime in which receptor activity is discrete and cellular decisions are made on…

Cell Behavior · Quantitative Biology 2026-03-12 Vincent Fiorino , Sean D. Lawley , Alan E. Lindsay

Recent advancements in the ability to construct three-dimensional (3D) tissues and organoids from stem cells and biomaterials have not only opened abundant new research avenues in disease modeling and regenerative medicine but also have…

Tissues and Organs · Quantitative Biology 2017-07-27 Richard J. McMurtrey

Precise 3D measurements of rigid surfaces are desired in many fields of application like quality control or surgery. Often, views from all around the object have to be acquired for a full 3D description of the object surface. We present a…

Optics · Physics 2014-01-10 Oliver Arold , Svenja Ettl , Florian Willomitzer , Gerd Häusler

Using a series of detector measurements taken at different locations to localize a source of radiation is a well-studied problem. The source of radiation is sometimes constrained to a single point-like source, in which case the location of…

Instrumentation and Detectors · Physics 2021-10-06 M. S. Bandstra , D. Hellfeld , J. R. Vavrek , B. J. Quiter , K. Meehan , P. J. Barton , J. W. Cates , A. Moran , V. Negut , R. Pavlovsky , T. H. Y. Joshi

The dynamical sampling problem is centered around reconstructing signals that evolve over time according to a dynamical process, from spatial-temporal samples that may be noisy. This topic has been thoroughly explored for one-dimensional…

Signal Processing · Electrical Eng. & Systems 2025-02-06 Yisen Wang , Hanqin Cai , Longxiu Huang

Cells adapt to changing environments by sensing ligand concentrations using specific receptors. The accuracy of sensing is ultimately limited by the finite number of ligand molecules bound by receptors. Previously derived physical limits to…

Subcellular Processes · Quantitative Biology 2019-11-13 Thierry Mora , Ilya Nemenman

Flying Triangulation sensors enable a free-hand and motion-robust 3D data acquisition of complex shaped objects. The measurement principle is based on a multi-line light-sectioning approach and uses sophisticated algorithms for real-time…

Computer Vision and Pattern Recognition · Computer Science 2013-05-20 Florian Willomitzer , Svenja Ettl , Christian Faber , Gerd Häusler

We study fluctuations of particle absorption by a three-dimensional domain with multiple absorbing patches. The domain is in contact with a gas of interacting diffusing particles. This problem is motivated by living cell sensing via…

Statistical Mechanics · Physics 2017-06-28 Tal Agranov , Baruch Meerson

We consider point sources in hyperbolic equations discretized by finite differences. If the source is stationary, appropriate source discretization has been shown to preserve the accuracy of the finite difference method. Moving point…

Numerical Analysis · Mathematics 2022-01-24 Ylva Ljungberg Rydin , Martin Almquist

A diffusion-based molecular communication system has two major components: the diffusion in the medium, and the ligand-reception. Information bits, encoded in the time variations of the concentration of molecules, are conveyed to the…

Information Theory · Computer Science 2012-05-23 Arash Einolghozati , Mohsen Sardari , Faramarz Fekri

We consider simultaneously identifying the membership and locations of point sources that are convolved with different band-limited point spread functions, from the observation of their superpositions. This problem arises in…

Information Theory · Computer Science 2017-03-22 Yuanxin Li , Yuejie Chi

Various biological cells secrete diffusing chemical compounds into their environment for communication purposes. Secretion usually takes place over the cell membrane in a spatially heterogeneous manner. Mathematical models of these…

Numerical Analysis · Mathematics 2025-11-20 Qiyao Peng , Sander C. Hille
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