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The flow of motor proteins on a filamental track is modelled within the the framework of lattice driven diffusive systems. Motors, considered as hopping particles, perform a highly biased asymmetric exclusion process when bound to the…

Statistical Mechanics · Physics 2007-05-23 M. Ebrahim Fouladvand , Modjtaba Salehi , Mostafa Yadegari

Compartmentalization into biochemically distinct organelles constantly exchanging material is one of the hallmarks of eukaryotic cells. In the most naive picture of inter-organelle transport driven by concentration gradients, concentration…

Subcellular Processes · Quantitative Biology 2015-05-27 Serge Dmitrieff , Pierre Sens

We study a kinetically constrained lattice glass model in which continuous local densities are randomly redistributed on neighbouring sites with a kinetic constraint that inhibits the process at high densities, and a random bias accounting…

Disordered Systems and Neural Networks · Physics 2007-05-23 Eric Bertin , Jean-Philippe Bouchaud , Francois Lequeux

In this paper we consider an advection-diffusion equation, in one space dimension, whose diffusivity can be negative. Such equations arise in particular in the modeling of vehicular traffic flows or crowds dynamics, where a negative…

Analysis of PDEs · Mathematics 2019-03-27 Andrea Corli , Luisa Malaguti

In the present paper we give a brief summary of some recent theoretical advances in the treatment of inhomogeneous fluids and methods which have applications in the study of dynamical properties of liquids in situations of extreme…

Statistical Mechanics · Physics 2015-07-15 Umberto Marini Bettolo Marconi , Simone Melchionna

The dynamics and structure of nonequilibrium liquids, driven by non-conservative forces which can be either external or internal, generically hold the signature of the net dissipation of energy in the thermostat. Yet, disentangling…

Statistical Mechanics · Physics 2019-11-06 Laura Tociu , Étienne Fodor , Takahiro Nemoto , Suriyanarayanan Vaikuntanathan

We consider the collective motion of finite-sized, overdamped Brownian particles (e.g., motor proteins) in a periodic potential. Simulations of our model have revealed a number of novel cooperative transport phenomena, including (i) the…

Statistical Mechanics · Physics 2009-10-31 Imre Derenyi , Tamas Vicsek

Artificial ecosystems provide an additional experimental tool to support laboratory work, field work, and theoretical development in competitive exclusion research. A novel application of a spatiotemporal agent based model is presented…

Populations and Evolution · Quantitative Biology 2023-06-01 John C. Stevenson

In the spirit of the macroscopic crowd motion models with hard congestion (i.e. a strong density constraint $\rho\leq 1$) introduced by Maury {\it et al.} some years ago, we analyze a variant of the same models where diffusion of the agents…

Analysis of PDEs · Mathematics 2016-03-03 Alpár Richárd Mészáros , Filippo Santambrogio

This study investigates the complex dynamic interactions between two typed populations coexisting within a shared space. We propose both theoretical and numerical study to analyze scenarios where one population (population $1$) must…

Analysis of PDEs · Mathematics 2025-01-28 Mariam Al Khatib , Said Gounane , Noureddine Igbida , Ghadir Jradi

Kinetic theory of dissipative particle dynamics is developed in terms of a Boltzmann pair collision theory. The kinetic transport coefficients are computed from explicit collision integrals and compared favourably with detailed simulations.…

Statistical Mechanics · Physics 2009-10-31 A. J. Masters , P. B. Warren

Numerous processes across both the physical and biological sciences are driven by diffusion. Partial differential equations (PDEs) are a popular tool for modelling such phenomena deterministically, but it is often necessary to use…

Quantitative Methods · Quantitative Biology 2016-05-25 Paul R. Taylor , Ruth E. Baker , Matthew J. Simpson , Christian A. Yates

In this paper we introduce and discuss kinetic equations for the evolution of the probability distribution of the number of particles in a population subject to binary interactions. The microscopic binary law of interaction is assumed to be…

Probability · Mathematics 2015-01-13 Federico Bassetti , Giuseppe Toscani

In this review article, we focus on collective motion in externally driven colloidal suspensions, as well as how these collective effects can be harnessed for use in microfluidic applications. We highlight the leading role of hydrodynamic…

Soft Condensed Matter · Physics 2018-11-01 Michelle Driscoll , Blaise Delmotte

This paper deals with collisionless transport equations in bounded open domains $\Omega \subset \R^{d}$ $(d\geq 2)$ with $\mathcal{C}^{1}$ boundary $\partial \Omega $, orthogonally invariant velocity measure $\bm{m}(\d v)$ with support…

Analysis of PDEs · Mathematics 2019-04-09 Bertrand Lods , Mustapha Mokhtar-Kharroubi , Ryszard Rudnicki

We analyse biased ensembles of trajectories for diffusive systems. In trajectories biased either by the total activity or the total current, we use fluctuating hydrodynamics to show that these systems exhibit phase transtions into…

Statistical Mechanics · Physics 2015-03-05 Robert L. Jack , Ian R. Thompson , Peter Sollich

In a recent paper Arita et al. [Phys. Rev. E 90, 052108 (2014)] consider the transport properties of a class of generalized exclusion processes. Analytical expressions for the transport-diffusion coefficient are derived by ignoring…

Statistical Mechanics · Physics 2016-07-05 T. Becker , K. Nelissen , B. Cleuren , B. Partoens , C. Van den Broeck

We propose a stochastic model for intracellular transport processes associated with the activity of molecular motors. This out-of-equilibrium model, based on a generalized Langevin equation, considers a particle immersed in a viscoelastic…

Biological Physics · Physics 2009-04-15 L. Bruno , M. A. Despósito

We present a comprehensive computational study of the collective behavior emerging from the competition between self-propulsion, excluded volume interactions and velocity-alignment in a two-dimensionnal model of active particles. We…

Soft Condensed Matter · Physics 2018-01-08 Aitor Martín-Gómez , Demian Levis , Albert Díaz-Guilera , Ignacio Pagonabarraga

The collective non-equilibrium dynamics of multi-component mixtures of interacting active (self-propelled) and passive (diffusive) particles have garnered great interest in the physics community. However, the mathematical understanding of…

Probability · Mathematics 2025-01-28 Deyue Li