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This work builds on our earlier work on designing demodulators for diffusion-based molecular communications using a Markovian approach. The demodulation filters take the form of an ordinary differential equation (ODE) which computes the…

Information Theory · Computer Science 2020-07-13 Muhammad Usman Riaz , Hamdan Awan , Chun Tung Chou

In synaptic molecular communication, the activation of postsynaptic receptors by neurotransmitters (NTs) is governed by a stochastic reaction-diffusion process and, hence, inherently random. It is currently not fully understood how this…

Emerging Technologies · Computer Science 2023-01-18 Sebastian Lotter , Maximilian Schäfer , Robert Schober

It is assumed that each nano-robot has a 0.1 micrometers cubed of tankage which is far smaller than the volume of a human red blood cell[6]. Thus, the nano-machines are non-invasive for biomedical applications, such as drug delivery and…

Emerging Technologies · Computer Science 2019-12-24 Ahmad Yousef

In this paper, we propose three novel modulation techniques, i.e., concentration-based, molecular-type-based, and molecular-ratio-based, using isomers as messenger molecules for nano communication networks via diffusion. To evaluate…

Information Theory · Computer Science 2012-08-01 Na-Rae Kim , Chan-Byoung Chae

Nanocommunications, understood as communications between nanoscale devices, is commonly regarded as a technology essential for cooperation of large groups of nanomachines and thus crucial for development of the whole area of nanotechnology.…

Biological Physics · Physics 2018-02-15 Pawel Kulakowski , Kamil Solarczyk , Krzysztof Wojcik

In synaptic molecular communication (MC), the activation of postsynaptic receptors by neurotransmitters (NTs) is governed by a stochastic reaction-diffusion process. This randomness of synaptic MC contributes to the randomness of the…

Subcellular Processes · Quantitative Biology 2023-01-18 Sebastian Lotter , Maximilian Schäfer , Robert Schober

Anomalous diffusion occurs at very different scales in nature, from atomic systems to motions in cell organelles, biological tissues or ecology, and also in artificial materials, such as cement. Being able to accurately measure the…

Machine Learning · Computer Science 2021-08-09 Òscar Garibo i Orts , Miguel A. Garcia-March , J. Alberto Conejero

Intercellular signaling has an important role in organism development, but not all communication occurs using the same mechanism. Here, we analyze the energy efficiency of intercellular signaling by two canonical mechanisms: diffusion of…

Quantitative Methods · Quantitative Biology 2022-11-30 Hyunjoong Kim , Yoichiro Mori , Joshua B. Plotkin

The problem of anomalous diffusion in momentum (velocity) space is considered based on the master equation and the appropriate probability transition function (PTF). The approach recently developed by the author for coordinate space, is…

Statistical Mechanics · Physics 2015-05-18 S. A. Trigger

Molecular communication between biological entities is a new paradigm in communications. Recently, we studied molecular communication between two nodes formed from synthetic bacteria. Due to high randomness in behavior of bacteria, we used…

Emerging Technologies · Computer Science 2014-10-07 Arash Einolghozati , Mohsen Sardari , Faramarz Fekri

Motivated by the numerous healthcare applications of molecular communication within Internet of Bio-Nano Things (IoBNT), this work addresses the problem of abnormality detection in a blood vessel using multiple biological embedded computing…

Information Theory · Computer Science 2018-07-10 Neeraj Varshney , Adarsh Patel , Yansha Deng , Werner Haselmayr , Pramod K. Varshney , Arumugam Nallanathan

To communicate at the nanoscale, researchers have proposed molecular communication as an energy-efficient solution. The drawback to this solution is that the histogram of the molecules' hitting times, which constitute the molecular signal…

Emerging Technologies · Computer Science 2018-08-21 Bayram Cevdet Akdeniz , Nafi Ahmet Turgut , H. Birkan Yilmaz , Chan-Byoung Chae , Tuna Tugcu , Ali Emre Pusane

Using molecular dynamics simulations, we show that free diffusion of a nanoscale particle (molecule) with asymmetric structure critically depends on the orientation in a finite timescale of picoseconds to nanoseconds. In a timescale of ~100…

Soft Condensed Matter · Physics 2013-07-29 Nan Sheng , Yusong Tu , Pan Guo , Rongzheng Wan , Haiping Fang

Molecular recognition, which is essential in processing information in biological systems, takes place in a crowded noisy biochemical environment and requires the recognition of a specific target within a background of various similar…

Biomolecules · Quantitative Biology 2010-07-27 Yonatan Savir , Tsvi Tlusty

In a molecular communication network, transmitters and receivers communicate by using signalling molecules. At the receivers, the signalling molecules react, via a chain of chemical reactions, to produce output molecules. The counts of…

Molecular Networks · Quantitative Biology 2020-07-23 Chun Tung Chou

A biomimetic model of cell-cell communication was developed to probe the passive molecular transport across ion channels inserted in synthetic lipid bilayers formed between contacting droplets arranged in a linear array. Diffusion of a…

Biological Physics · Physics 2019-08-28 Manon Valet , Léa-Laetitia Pontani , Raphaël Voituriez , Elie Wandersman , Alexis M. Prevost

This paper studies a three-node network in which an intermediate nano-transceiver, acting as a relay, is placed between a nano-transmitter and a nano-receiver to improve the range of diffusion-based molecular communication. Motivated by the…

Information Theory · Computer Science 2015-04-16 Arman Ahmadzadeh , Adam Noel , Andreas Burkovski , Robert Schober

We consider a model system in which anomalous diffusion is generated by superposition of underlying linear modes with a broad range of relaxation times. In the language of Gaussian polymers, our model corresponds to Rouse (Fourier) modes…

Statistical Mechanics · Physics 2010-03-11 Assaf Amitai , Yacov Kantor , Mehran Kardar

Molecular communication (MC) is a bio-inspired communication method based on the exchange of molecules for information transfer among nanoscale devices. Although MC has been extensively studied from various aspects, limitations imposed by…

Emerging Technologies · Computer Science 2016-07-29 Murat Kuscu , Ozgur B. Akan

In this work a stochastic model of gaseous transfer in polymer/CNT nanocomposites is presented. The model takes into account interfacial areas, i.e. polymer depletion regions. The local regime of transport is controlled by the density of…

Materials Science · Physics 2023-11-09 Polina Kalashnikova , Ilia Kalashnikov , Konstantin Khromov