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Interacting, self-propelled particles such as epithelial cells can dynamically self-organize into complex multicellular patterns, which are challenging to classify without a priori information. Classically, different phases and phase…

Quantitative Methods · Quantitative Biology 2021-01-19 Dhananjay Bhaskar , William Y. Zhang , Ian Y. Wong

Multivariate time series can often have a large number of dimensions, whether it is due to the vast amount of collected features or due to how the data sources are processed. Frequently, the main structure of the high-dimensional time…

Methodology · Statistics 2021-10-11 Euan Thomas McGonigle , Hankui Peng

Network theory provides various tools for investigating the structural or functional topology of many complex systems found in nature, technology and society. Nevertheless, it has recently been realised that a considerable number of systems…

Data Analysis, Statistics and Probability · Physics 2012-03-23 Jonathan F. Donges , Hanna C. H. Schultz , Norbert Marwan , Yong Zou , Juergen Kurths

Spatial networks are ubiquitous in social, geographical, physical, and biological applications. To understand the large-scale structure of networks, it is important to develop methods that allow one to directly probe the effects of space on…

Social and Information Networks · Computer Science 2020-09-23 Michelle Feng , Mason A. Porter

Real-time analysis of graphs containing temporal information, such as social media streams, Q&A networks, and cyber data sources, plays an important role in various applications. Among them, detecting patterns is one of the fundamental…

Databases · Computer Science 2023-12-19 Seunghwan Min , Jihoon Jang , Kunsoo Park , Dora Giammarresi , Giuseppe F. Italiano , Wook-Shin Han

We study the persistent homology of both functional data on compact topological spaces and structural data presented as compact metric measure spaces. One of our goals is to define persistent homology so as to capture primarily properties…

Algebraic Topology · Mathematics 2018-11-27 Haibin Hang , Facundo Mémoli , Washington Mio

This paper concerns a theoretical approach that combines topological data analysis (TDA) and sheaf theory. Topological data analysis, a rising field in mathematics and computer science, concerns the shape of the data and has been proven…

Computer Vision and Pattern Recognition · Computer Science 2020-12-04 Chuan-Shen Hu , Yu-Min Chung

Large-scale proteomic analysis is emerging as a powerful technique in biology and relies heavily on data acquired by state-of-the-art mass spectrometers. As with any other field in Systems Biology, computational tools are required to deal…

Quantitative Methods · Quantitative Biology 2011-05-02 Fahad Saeed , Trairak Pisitkun , Mark A. Knepper , Jason D. Hoffert

The family of visibility algorithms were recently introduced as mappings between time series and graphs. Here we extend this method to characterize spatially extended data structures by mapping scalar fields of arbitrary dimension into…

Data Analysis, Statistics and Probability · Physics 2017-09-13 Lucas Lacasa , Jacopo Iacovacci

Temporal interpolation often plays a crucial role to learn meaningful representations in dynamic scenes. In this paper, we propose a novel method to train spatiotemporal neural radiance fields of dynamic scenes based on temporal…

Computer Vision and Pattern Recognition · Computer Science 2023-03-30 Sungheon Park , Minjung Son , Seokhwan Jang , Young Chun Ahn , Ji-Yeon Kim , Nahyup Kang

In the task of near similar image search, features from Deep Neural Network is often used to compare images and measure similarity. In the past, we only focused visual search in image dataset without text data. However, since deep neural…

Computer Vision and Pattern Recognition · Computer Science 2018-11-29 Jonghwa Yim , Junghun James Kim , Daekyu Shin

We propose an adaptive control strategy for the simultaneous estimation of topology and synchronization in complex dynamical networks with unknown, time-varying topology. Our approach transforms the problem of time-varying topology…

Multiagent Systems · Computer Science 2024-09-16 Nana Wang , Esteban Restrepo , Dimos V. Dimarogonas

We study the problem of parameter estimation for time-series possessing two, widely separated, characteristic time scales. The aim is to understand situations where it is desirable to fit a homogenized singlescale model to such multiscale…

Statistics Theory · Mathematics 2009-11-11 G. A. Pavliotis , A. M. Stuart

The automatic detection of changes or anomalies between multispectral and hyperspectral images collected at different time instants is an active and challenging research topic. To effectively perform change-point detection in multitemporal…

Signal Processing · Electrical Eng. & Systems 2022-11-28 Ricardo Augusto Borsoi , Cédric Richard , André Ferrari , Jie Chen , José Carlos Moreira Bermudez

We proposed a data-driven approach to dissect multivariate time series in order to discover multiple phases underlying dynamics of complex systems. This computing approach is developed as a multiple-dimension version of Hierarchical Factor…

Methodology · Statistics 2021-03-09 Xiaodong Wang , Fushing Hsieh

Data dependencies have been extended to graphs to characterize topological and value constraints. Existing data dependencies are defined to capture inconsistencies in static graphs. Nevertheless, inconsistencies may occur over evolving…

Databases · Computer Science 2022-07-27 Morteza Alipourlangouri , Adam Mansfield , Fei Chiang , Yinghui Wu

The analysis of contours of scalar fields plays an important role in visualization. For example the contour tree and contour statistics can be used as a means for interaction and filtering or as signatures. In the context of tensor field…

Graphics · Computer Science 2019-12-03 Talha Bin Masood , Ingrid Hotz

Comparison of graph structure is a ubiquitous task in data analysis and machine learning, with diverse applications in fields such as neuroscience, cyber security, social network analysis, and bioinformatics, among others. Discovery and…

Applications · Statistics 2023-01-11 Peter Wills , Francois G. Meyer

Topological data analysis (TDA) is an area of data science that focuses on using invariants from algebraic topology to provide multiscale shape descriptors for geometric data sets such as point clouds. One of the most important such…

Computational Geometry · Computer Science 2023-06-21 David Loiseaux , Mathieu Carrière , Andrew J. Blumberg

For safety and robustness of AI systems, we introduce topological parallax as a theoretical and computational tool that compares a trained model to a reference dataset to determine whether they have similar multiscale geometric structure.…

Machine Learning · Computer Science 2023-10-30 Abraham D. Smith , Michael J. Catanzaro , Gabrielle Angeloro , Nirav Patel , Paul Bendich