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This work presents a novel diffusion based dual-phase molecular communication system where the source leverages multiple cooperating nanomachines to improve the end-to-end reliability of communication. The Neyman-Pearson Likelihood Ratio…

Information Theory · Computer Science 2017-10-17 Neeraj Varshney , Adarsh Patel , Aditya K. Jagannatham

Molecular communication between biological entities is a new paradigm in communications. Recently, we studied molecular communication between two nodes formed from synthetic bacteria. Due to high randomness in behavior of bacteria, we used…

Emerging Technologies · Computer Science 2014-10-07 Arash Einolghozati , Mohsen Sardari , Faramarz Fekri

The design of communication systems capable of processing and exchanging information through molecules and chemical processes is a rapidly growing interdisciplinary field, which holds the promise to revolutionize how we realize computing…

Emerging Technologies · Computer Science 2019-08-12 Dadi Bi , Yansha Deng , Massimiliano Pierobon , Arumugam Nallanathan

In this paper, we propose an end-to-end channel model for molecular communication systems with metal-oxide sensors. In particular, we focus on the recently developed table top molecular communication platform. The system is separated into…

Emerging Technologies · Computer Science 2015-03-11 Na-Rae Kim , Nariman Farsad , Chan-Byoung Chae , Andrew W. Eckford

In this paper, we investigate the achievable rate of a diffusive Molecular Communication (MC) channel with fully absorbing receiver, which counts particles absorbed along each symbol interval and resets the counter at every interval…

Information Theory · Computer Science 2023-06-08 Fardad Vakilipoor , Luca Barletta , Stefano Bregni , Maurizio Magarini

In conventional molecular communication (MC) systems, the signaling molecules used for information transmission are stored, released, and then replenished by a transmitter (TX). However, the replenishment of signaling molecules at the TX is…

Machine learning approaches to Structure-Based Drug Design (SBDD) have proven quite fertile over the last few years. In particular, diffusion-based approaches to SBDD have shown great promise. We present a technique which expands on this…

Machine Learning · Computer Science 2024-07-01 Matan Halfon , Eyal Rozenberg , Ehud Rivlin , Daniel Freedman

Diffusive properties of a monodisperse system of interacting particles confined to a \textit{quasi}-one-dimensional (Q1D) channel are studied using molecular dynamics (MD) simulations. We calculate numerically the mean-squared displacement…

Soft Condensed Matter · Physics 2013-01-10 D. Lucena , D. V. Tkachenko , K. Nelissen , V. R. Misko , W. P. Ferreira , G. A. Farias , F. M. Peeters

In the context of the Internet of Bio-Nano Things (IoBNT), nano-devices are envisioned to perform complex tasks collaboratively, i.e., by communicating with each other. One candidate for the implementation of such devices are engineered…

Emerging Technologies · Computer Science 2024-04-04 Bastian Heinlein , Lukas Brand , Malcolm Egan , Maximilian Schäfer , Robert Schober , Sebastian Lotter

In this work, we consider diffusion-based molecular communication timing channels. Three different timing channels are presented based on three different modulation techniques, i.e., i) modulation of the release timing of the information…

Information Theory · Computer Science 2015-12-08 Nariman Farsad , Weisi Guo , Chan-Byoung Chae , Andrew Eckford

We consider a molecular communication system comprised of a transmitter, an absorbing receiver, and an interference source. Assuming amplitude modulation, we analyze the dependence of the bit error rate (BER) on the detection interval,…

Information Theory · Computer Science 2020-05-05 Trang Ngoc Cao , Nikola Zlatanov , Phee Lep Yeoh , Jamie S. Evans

By means of analytical calculations and numerical simulations we study the diffusion properties in quasi-two-dimensional structures with two exciton subsystems with an exchange between them. The experimental realisation is possible in…

Statistical Mechanics · Physics 2024-07-18 Oluwafemi P. Adejumobi , Vladimir N. Mantsevich , Vladimir V. Palyulin

For nano-scale communications, there must be cooperation and simultaneous communication between nano devices. To this end, in this paper we investigate two-way (a.k.a. bi-directional) molecular communications between nano devices. If…

Emerging Technologies · Computer Science 2020-05-06 Jong Woo Kwak , H. Birkan Yilmaz , Nariman Farsad , Chan-Byoung Chae , Andrea Goldsmith

In cellular mobile networks, wireless channel quality (CQ) is a crucial factor in determining communication performance and user's network experience. Accurately predicting CQ based on real environmental characteristics, specific base…

Networking and Internet Architecture · Computer Science 2024-10-24 Xiaoqian Qi , Haoye Chai , Yong Li

Transmitter localization in vessel-like molecular communication channels is a fundamental problem with potential applications in healthcare. Existing analytical solutions either assume knowledge of emission time or require multiple closely…

Information Theory · Computer Science 2026-03-27 Dağhan Erdönmez , H. Birkan Yilmaz

Molecular conformation generation, a critical aspect of computational chemistry, involves producing the three-dimensional conformer geometry for a given molecule. Generating molecular conformation via diffusion requires learning to reverse…

Computational Physics · Physics 2023-10-10 Zihan Zhou , Ruiying Liu , Chaolong Ying , Ruimao Zhang , Tianshu Yu

Synaptic communication is studied by communication engineers for two main reasons. One is to enable novel neuroengineering applications that require interfacing with neurons. The other reason is to draw inspiration for the design of…

Neurons and Cognition · Quantitative Biology 2023-01-18 Sebastian Lotter , Michael T. Barros , Robert Schober , Maximilian Schäfer

This survey paper focuses on the estimation schemes in molecular communication (MC) systems. The existing studies in estimation schemes can be divided into parameter estimation (e.g., distance, diffusion coefficient, and flow velocity) and…

Information Theory · Computer Science 2021-07-20 Xinyu Huang , Yuting Fang , Nan Yang

When addressing spatial biological questions using mathematical models, symmetries within the system are often exploited to simplify the problem by reducing its physical dimension. In a reduced-dimension model molecular movement is…

Quantitative Methods · Quantitative Biology 2025-02-17 Natasha S. Savage

In this work, we investigate the communication reliability for diffusion-based molecular communication, using the indicator of bit error rate (BER). A molecular classified model is established to divide molecules into three parts, which are…

Information Theory · Computer Science 2015-08-06 Peng He , Yuming Mao , Qiang Liu , Kun Yang