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A combination of hierarchical tree-like data structures and data access patterns from fast multipole methods and hierarchical low-rank approximation of linear operators from H-matrix methods appears to form an algorithmic path forward for…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-06-10 Rio Yokota , George Turkiyyah , David Keyes

Kernel matrix-vector product is ubiquitous in many science and engineering applications. However, a naive method requires $O(N^2)$ operations, which becomes prohibitive for large-scale problems. We introduce a parallel method that provably…

Mathematical Software · Computer Science 2021-04-30 Ruoxi Wang , Chao Chen , Jonghyun Lee , Eric Darve

Markov chain Monte Carlo (MCMC) is the predominant tool used in Bayesian parameter estimation for hierarchical models. When the model expands due to an increasing number of hierarchical levels, number of groups at a particular level, or…

Computation · Statistics 2016-06-22 Will Landau , Jarad Niemi

We consider discretizations of the hyper-singular integral operator on closed surfaces and show that the inverses of the corresponding system matrices can be approximated by blockwise low-rank matrices at an exponential rate in the block…

Numerical Analysis · Mathematics 2017-12-04 Markus Faustmann , Jens Markus Melenk , Dirk Praetorius

We consider the approximate computation of spectral projectors for symmetric banded matrices. While this problem has received considerable attention, especially in the context of linear scaling electronic structure methods, the presence of…

Numerical Analysis · Mathematics 2016-08-04 Daniel Kressner , Ana Susnjara

A fast algorithm for the approximate multiplication of matrices with decay is introduced; the Sparse Approximate Matrix Multiply (SpAMM) reduces complexity in the product space, a different approach from current methods that economize…

Data Structures and Algorithms · Computer Science 2010-11-17 Matt Challacombe , Nicolas Bock

We use available measurements to estimate the unknown parameters (variance, smoothness parameter, and covariance length) of a covariance function by maximizing the joint Gaussian log-likelihood function. To overcome cubic complexity in the…

Computation · Statistics 2018-09-13 Alexander Litvinenko , Ying Sun , Marc G. Genton , David Keyes

We propose a fine-grained hypergraph model for sparse matrix-matrix multiplication (SpGEMM), a key computational kernel in scientific computing and data analysis whose performance is often communication bound. This model correctly describes…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-03-18 Grey Ballard , Alex Druinsky , Nicholas Knight , Oded Schwartz

Matrix multiplication is a very important computation kernel both in its own right as a building block of many scientific applications and as a popular representative for other scientific applications. Cannon algorithm which dates back to…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-06-19 Jean-Noel Quintin , Khalid Hasanov , Alexey Lastovetsky

Highly oscillatory differential equations, commonly encountered in multi-scale problems, are often too complex to solve analytically. However, several numerical methods have been developed to approximate their solutions. Although these…

Numerical Analysis · Mathematics 2026-01-21 Maxime Bouchereau

Modern graphics computing units (GPUs) are designed and optimized to perform highly parallel numerical calculations. This parallelism has enabled (and promises) significant advantages, both in terms of energy performance and calculation. In…

Hardware Architecture · Computer Science 2021-10-26 Quentin Gallouédec

Specialized function gradient computing hardware could greatly improve the performance of state-of-the-art optimization algorithms, e.g., based on gradient descent or conjugate gradient methods that are at the core of control, machine…

In this work, we propose a modified Bayesian Information Criterion (BIC) specifically designed for mixture models and hierarchical structures. This criterion incorporates the determinant of the Hessian matrix of the log-likelihood function,…

Embedding techniques have become essential components of large databases in the deep learning era. By encoding discrete entities, such as words, items, or graph nodes, into continuous vector spaces, embeddings facilitate more efficient…

Information Retrieval · Computer Science 2024-10-18 Shiwei Li , Zhuoqi Hu , Xing Tang , Haozhao Wang , Shijie Xu , Weihong Luo , Yuhua Li , Xiuqiang He , Ruixuan Li

${\cal H}^2$-matrix constitutes a general mathematical framework for efficient computation of both partial-differential-equation and integral-equation-based operators. Existing linear-complexity ${\cal H}^2$ matrix-matrix product (MMP)…

Numerical Analysis · Mathematics 2019-08-15 Miaomiao Ma , Dan Jiao

Mixtures of linear mixed models (MLMMs) are useful for clustering grouped data and can be estimated by likelihood maximization through the EM algorithm. The conventional approach to determining a suitable number of components is to compare…

Applications · Statistics 2014-05-26 Siew Li Tan , David J. Nott

Hierarchical $\mathcal{H}^2$-matrices are asymptotically optimal representations for the discretizations of non-local operators such as those arising in integral equations or from kernel functions. Their $O(N)$ complexity in both memory and…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-09-14 Stefano Zampini , Wajih Boukaram , George Turkiyyah , Omar Knio , David E. Keyes

Meta-analysis represents a widely accepted approach for evaluating the accuracy of diagnostic tools in clinical and psychological investigations. This paper investigates the applicability of multinomial tree models recently suggested in the…

Methodology · Statistics 2024-05-29 Annamaria Guolo

We present a fast and memory-efficient algorithm for transient, space-time-domain, and elastodynamic boundary-integral analysis. Associated data-sparse approximations and operations are named fast domain partitioning hierarchical matrices…

Computational Physics · Physics 2026-03-20 Dye SK Sato , Ryosuke Ando

General Matrix Multiplication (GEMM) is the cornerstone of HPC workloads and Deep Learning. State-of-the-art vendor libraries tune tensor layouts, parallelization schemes, and cache blocking to minimize data movement across the memory…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-04-09 Evangelos Georganas , Alexander Heinecke , Pradeep Dubey
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