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In this paper, we introduce a package for semi-supervised learning research in the R programming language called RSSL. We cover the purpose of the package, the methods it includes and comment on their use and implementation. We then show,…

Machine Learning · Statistics 2016-12-26 Jesse H. Krijthe

Mediation analysis is one of the most widely used statistical techniques in the social, behavioral, and medical sciences. Mediation models allow to study how an independent variable affects a dependent variable indirectly through one or…

Computation · Statistics 2022-08-18 Andreas Alfons , Nüfer Y. Ateş , Patrick J. F. Groenen

The functional logit regression model was proposed by Escabias et al. (2004) with the objective of modeling a scalar binary response variable from a functional predictor. The model estimation proposed in that case was performed in a…

Methodology · Statistics 2024-02-08 Manuel Escabias , Ana M. Aguilera , Christian Acal

In order to help in the identification of INTEGRAL/ISGRI sources, we have developed a software package which allows a rapid and detailed cross-correlation to be performed between various source catalogues. It allows subsets of catalogues to…

Astrophysics · Physics 2007-05-23 John B. Stephen , A. Malizia , L. Bassani

We present MRPC, an R package that learns causal graphs with improved accuracy over existing packages, such as pcalg and bnlearn. Our algorithm builds on the powerful PC algorithm, the canonical algorithm in computer science for learning…

Machine Learning · Statistics 2018-06-07 Md. Bahadur Badsha , Evan A Martin , Audrey Qiuyan Fu

Resampling algorithms are a useful approach to deal with imbalanced learning in multilabel scenarios. These methods have to deal with singularities in the multilabel data, such as the occurrence of frequent and infrequent labels in the same…

Machine Learning · Computer Science 2025-01-22 Antonio J. Rivera , Miguel A. Dávila , David Elizondo , María J. del Jesus , Francisco Charte

Model-based clustering is a popular approach for clustering multivariate data which has seen applications in numerous fields. Nowadays, high-dimensional data are more and more common and the model-based clustering approach has adapted to…

Methodology · Statistics 2018-09-25 Michael Fop , Thomas Brendan Murphy

The causalimages R package enables causal inference with image and image sequence data, providing new tools for integrating novel data sources like satellite and bio-medical imagery into the study of cause and effect. One set of functions…

Machine Learning · Computer Science 2023-11-13 Connor T. Jerzak , Adel Daoud

Integrating multiple observational studies for meta-analysis has sparked much interest. The presented R package WMAP (Weighted Meta-Analysis with Pseudo-Population) addresses a critical gap in the implementation of integrative weighting…

Methodology · Statistics 2025-07-01 Subharup Guha , Mengqi Xu , Kashish Priyam , Yi Li

Next generation computer architectures will include order of magnitude more intra-node parallelism; however, many application programmers have a difficult time keeping their codes current with the state-of-the-art machines. In this context,…

Computational Engineering, Finance, and Science · Computer Science 2013-08-08 Andy R. Terrel , Kyle T. Mandli

In the context of regression with a large number of explanatory variables, Cox and Battey (2017) emphasize that if there are alternative reasonable explanations of the data that are statistically indistinguishable, one should aim to specify…

Computation · Statistics 2019-03-15 Henrique Helfer Hoeltgebaum , Heather Battey

The mplot package provides an easy to use implementation of model stability and variable inclusion plots (M\"uller and Welsh 2010; Murray, Heritier, and M\"uller 2013) as well as the adaptive fence (Jiang, Rao, Gu, and Nguyen 2008; Jiang,…

Methodology · Statistics 2018-03-05 Garth Tarr , Samuel Müller , Alan Welsh

The \pkg{pintervals} package aims to provide a unified framework for constructing prediction intervals and calibrating predictions in a model-agnostic setting using set-aside calibration data. It comprises routines to construct conformal as…

Applications · Statistics 2026-01-08 David Randahl , Anders Hjort , Jonathan P. Williams

High-dimensional prediction considers data with more variables than samples. Generic research goals are to find the best predictor or to select variables. Results may be improved by exploiting prior information in the form of co-data,…

Methodology · Statistics 2022-05-17 Mirrelijn M. van Nee , Lodewyk F. A. Wessels , Mark A. van de Wiel

Graphical models provide powerful tools to uncover complicated patterns in multivariate data and are commonly used in Bayesian statistics and machine learning. In this paper, we introduce the R package BDgraph which performs Bayesian…

Machine Learning · Statistics 2019-05-14 Reza Mohammadi , Ernst C. Wit

Robust estimation provides essential tools for analyzing data that contain outliers, ensuring that statistical models remain reliable even in the presence of some anomalous data. While robust methods have long been available in R, users of…

Computation · Statistics 2024-11-05 Sarah Leyder , Jakob Raymaekers , Peter J. Rousseeuw , Thomas Servotte , Tim Verdonck

We present in this work a new methodology to design kernels on data which is structured with smaller components, such as text, images or sequences. This methodology is a template procedure which can be applied on most kernels on measures…

Machine Learning · Computer Science 2007-05-23 Marco Cuturi , Kenji Fukumizu

The advent of miniaturized biologging devices has provided ecologists with unprecedented opportunities to record animal movement across scales, and led to the collection of ever-increasing quantities of tracking data. In parallel,…

Quantitative Methods · Quantitative Biology 2019-10-16 Rocio Joo , Matthew E. Boone , Thomas A. Clay , Samantha C. Patrick , Susana Clusella-Trullas , Mathieu Basille

We present StructuralDecompose, an R package for modular and interpretable time series decomposition. Unlike existing approaches that treat decomposition as a monolithic process, StructuralDecompose separates the analysis into distinct…

Machine Learning · Computer Science 2025-10-07 Allen Daniel Sunny

Multimodal density estimation is a fundamental problem in scientific computing. Determining the number of modes in a distribution is a core numerical challenge with applications across ecology, economics, genomics, and astronomy. While the…

Mathematical Software · Computer Science 2026-05-20 Ruiyu Zhang , Qihao Wang