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Applying machine learning to biological sequences - DNA, RNA and protein - has enormous potential to advance human health, environmental sustainability, and fundamental biological understanding. However, many existing machine learning…

Machine Learning · Statistics 2023-04-11 Alan Nawzad Amin , Eli Nathan Weinstein , Debora Susan Marks

We present a novel framework for kernel learning with sequential data of any kind, such as time series, sequences of graphs, or strings. Our approach is based on signature features which can be seen as an ordered variant of sample…

Machine Learning · Statistics 2016-02-01 Franz J Király , Harald Oberhauser

The use of kernel functions is a common technique to extract important features from data sets. A quantum computer can be used to estimate kernel entries as transition amplitudes of unitary circuits. Quantum kernels exist that, subject to…

The state-of-the-art CNN models give good performance on sentence classification tasks. The purpose of this work is to empirically study desirable properties such as semantic coherence, attention mechanism and reusability of CNNs in these…

Computation and Language · Computer Science 2016-10-11 Madhusudan Lakshmana , Sundararajan Sellamanickam , Shirish Shevade , Keerthi Selvaraj

Kernel regression is an essential and ubiquitous tool for non-parametric data analysis, particularly popular among time series and spatial data. However, the central operation which is performed many times, evaluating a kernel on the data…

Machine Learning · Computer Science 2017-06-01 Yan Zheng , Jeff M. Phillips

Graph kernels have attracted a lot of attention during the last decade, and have evolved into a rapidly developing branch of learning on structured data. During the past 20 years, the considerable research activity that occurred in the…

Machine Learning · Statistics 2021-11-25 Giannis Nikolentzos , Giannis Siglidis , Michalis Vazirgiannis

Recurrent Neural Networks (RNNs) have been proven to be effective in modeling sequential data and they have been applied to boost a variety of tasks such as document classification, speech recognition and machine translation. Most of…

Computation and Language · Computer Science 2018-08-21 Zhiwei Wang , Yao Ma , Dawei Yin , Jiliang Tang

This work proposes kernel transform learning. The idea of dictionary learning is well known; it is a synthesis formulation where a basis is learnt along with the coefficients so as to generate or synthesize the data. Transform learning is…

Computer Vision and Pattern Recognition · Computer Science 2020-08-10 Jyoti Maggu , Angshul Majumdar

The use of kernels for nonlinear prediction is widespread in machine learning. They have been popularized in support vector machines and used in kernel ridge regression, amongst others. Kernel methods share three aspects. First, instead of…

Machine Learning · Statistics 2025-08-25 Patrick J. F. Groenen , Michael Greenacre

Graph kernels have been successfully applied to many graph classification problems. Typically, a kernel is first designed, and then an SVM classifier is trained based on the features defined implicitly by this kernel. This two-stage…

This survey is an introduction to positive definite kernels and the set of methods they have inspired in the machine learning literature, namely kernel methods. We first discuss some properties of positive definite kernels as well as…

Machine Learning · Statistics 2009-12-04 Marco Cuturi

Substring kernels are classical tools for representing biological sequences or text. However, when large amounts of annotated data are available, models that allow end-to-end training such as neural networks are often preferred. Links…

Machine Learning · Statistics 2019-10-18 Dexiong Chen , Laurent Jacob , Julien Mairal

Kernel methods have great promise for learning rich statistical representations of large modern datasets. However, compared to neural networks, kernel methods have been perceived as lacking in scalability and flexibility. We introduce a…

Machine Learning · Computer Science 2014-12-22 Zichao Yang , Alexander J. Smola , Le Song , Andrew Gordon Wilson

Prominently used in support vector machines and logistic regressions, kernel functions (kernels) can implicitly map data points into high dimensional spaces and make it easier to learn complex decision boundaries. In this work, by replacing…

Computation and Language · Computer Science 2019-10-29 Yingbo Gao , Christian Herold , Weiyue Wang , Hermann Ney

In many applications data is naturally presented in terms of orderings of some basic elements or symbols. Reasoning about such data requires a notion of similarity capable of handling sequences of different lengths. In this paper we…

Machine Learning · Computer Science 2015-01-27 Andrea Baisero , Florian T. Pokorny , Carl Henrik Ek

The success of kernel-based learning methods depend on the choice of kernel. Recently, kernel learning methods have been proposed that use data to select the most appropriate kernel, usually by combining a set of base kernels. We introduce…

Machine Learning · Computer Science 2011-12-21 Arash Afkanpour , Csaba Szepesvari , Michael Bowling

Kernel methods are powerful machine learning techniques which implement generic non-linear functions to solve complex tasks in a simple way. They Have a solid mathematical background and exhibit excellent performance in practice. However,…

Machine Learning · Computer Science 2021-01-27 J. Emmanuel Johnson , Valero Laparra , Adrián Pérez-Suay , Miguel D. Mahecha , Gustau Camps-Valls

Graph-structured data arise in wide applications, such as computer vision, bioinformatics, and social networks. Quantifying similarities among graphs is a fundamental problem. In this paper, we develop a framework for computing graph…

Machine Learning · Statistics 2018-09-11 Zhen Zhang , Mianzhi Wang , Yijian Xiang , Yan Huang , Arye Nehorai

In this paper we show how specific families of positive definite kernels serve as powerful tools in analyses of iteration algorithms for multiple layer feedforward Neural Network models. Our focus is on particular kernels that adapt well to…

Machine Learning · Computer Science 2023-01-09 Palle E. T. Jorgensen , Myung-Sin Song , James Tian

Quantum kernel methods are a promising branch of quantum machine learning, yet their effectiveness on diverse, high-dimensional, real-world data remains unverified. Current research has largely been limited to low-dimensional or synthetic…

Machine Learning · Computer Science 2026-02-19 Jiang Yuhan , Matthew Otten
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