Related papers: Optimal $k$-Deletion Correcting Codes
We consider the problem of constructing codes that can correct $\delta$ deletions occurring in an arbitrary binary string of length $n$ bits. Varshamov-Tenengolts (VT) codes can correct all possible single deletions $(\delta=1)$ with an…
This work studies problems in data reconstruction, an important area with numerous applications. In particular, we examine the reconstruction of binary and non-binary sequences from synchronization (insertion/deletion-correcting) codes.…
The problem of designing codes for deletion-correction and synchronization has received renewed interest due to applications in DNA-based data storage systems that use nanopore sequencers as readout platforms. In almost all instances,…
We study codes that can detect the exact number of deletions and insertions in concatenated binary strings. We construct optimal codes for the case of detecting up to $\del$ deletions. We prove the optimality of these codes by deriving a…
Motivated by the sequence reconstruction problem from traces in DNA-based storage, we consider the problem of designing codes for the deletion channel when multiple observations (or traces) are available to the decoder. We propose simple…
Codes for correcting sticky insertions/deletions and limited-magnitude errors have attracted significant attention due to their applications of flash memories, racetrack memories, and DNA data storage systems. In this paper, we first…
This paper provides a new instance of quantum deletion error-correcting codes. This code can correct any single quantum deletion error, while our code is only of length 4. This paper also provides an example of an encoding quantum circuit…
A knot $K$ in a directed graph $D$ is a strongly connected component of size at least two such that there is no arc $(u,v)$ with $u \in V(K)$ and $v\notin V(K)$. Given a directed graph $D=(V,E)$, we study Knot-Free Vertex Deletion (KFVD),…
We construct deletion error-correcting codes in the oblivious model, where errors are adversarial but oblivious to the encoder's randomness. Oblivious errors bridge the gap between the adversarial and random error models, and are motivated…
In coding theory, handling errors that occur when symbols are inserted or deleted from a transmitted message is a long-standing challenge. Optimising redundancy for insertion and deletion channels remains a key open problem with significant…
The deletion channel is known to be a notoriously diffcult channel to design error-correction codes for. In spite of this difficulty, there are some beautiful code constructions which give some intuition about the channel and about what…
Encoding data as a set of unordered strings is receiving great attention as it captures one of the basic features of DNA storage systems. However, the challenge of constructing optimal redundancy codes for this channel remained elusive. In…
We study deletion-correcting codes for an adversarial nanopore channel in which at most $t$ deletions may occur. We propose an explicit construction of $q$-ary codes of length $n$ for this channel with $2t\log_q n+\Theta(\log\log n)$…
We consider deletion correcting codes over a q-ary alphabet. It is well known that any code capable of correcting s deletions can also correct any combination of s total insertions and deletions. To obtain asymptotic upper bounds on code…
The sequence reconstruction problem, introduced by Levenshtein in 2001, considers a communication setting in which a sender transmits a codeword and the receiver observes K independent noisy versions of this codeword. In this work, we study…
In this paper, we construct systematic $q$-ary two-deletion correcting codes and burst-deletion correcting codes, where $q\geq 2$ is an even integer. For two-deletion codes, our construction has redundancy $5\log n+O(\log q\log\log n)$ and…
Constructing Reed-Solomon (RS) codes that can correct insertion and deletion (ins-del) errors has been the focus of several recent studies. However, efficient decoding algorithms for such codes have received less attention and remain a…
Permutation codes and multi-permutation codes have been widely considered due to their various applications, especially in flash memory. In this paper, we consider permutation codes and multi-permutation codes against a burst of stable…
We give an explicit construction of length-$n$ binary codes capable of correcting the deletion of two bits that have size $2^n/n^{4+o(1)}$. This matches up to lower order terms the existential result, based on an inefficient greedy choice…
Motivated by average-case trace reconstruction and coding for portable DNA-based storage systems, we initiate the study of \emph{coded trace reconstruction}, the design and analysis of high-rate efficiently encodable codes that can be…