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State-of-the-art neural networks can be trained to become remarkable solutions to many problems. But while these architectures can express symbolic, perfect solutions, trained models often arrive at approximations instead. We show that the…

Machine Learning · Computer Science 2025-09-09 Matan Abudy , Orr Well , Emmanuel Chemla , Roni Katzir , Nur Lan

Recent advances in biological research have seen the emergence of high-throughput technologies with numerous applications that allow the study of biological mechanisms at an unprecedented depth and scale. A large amount of genomic data is…

Machine Learning · Statistics 2020-05-11 Nanwei Wang , Laurent Briollais , Helene Massam

Since interactions in neural systems occur across multiple temporal scales, it is likely that information flow will exhibit a multiscale structure, thus requiring a multiscale generalization of classical temporal precedence causality…

Quantitative Methods · Quantitative Biology 2017-07-13 Sebastiano Stramaglia , Iege Bassez , Luca Faes , Daniele Marinazzo

Variable selection naturally arises as a useful subject when faced with data with massive predictor space. In addition to the massive dimensionality, the data may be characterized by intra-subject correlation, and cure fraction, which are…

Methodology · Statistics 2025-12-24 Richard Tawiah , Shu Kay Ng , Geoffrey J. McLachlan

With the advancement of neural networks, diverse methods for neural Granger causality have emerged, which demonstrate proficiency in handling complex data, and nonlinear relationships. However, the existing framework of neural Granger…

Machine Learning · Computer Science 2024-05-15 Wanqi Zhou , Shuanghao Bai , Shujian Yu , Qibin Zhao , Badong Chen

Multiple Correspondence Analysis (MCA) is a dimension reduction method which plays a large role in the analysis of tables with categorical nominal variables such as survey data. Though it is usually motivated and derived using geometric…

Methodology · Statistics 2016-05-16 William Fithian , Julie Josse

Background: The integration and analysis of multi-modal data are increasingly essential across various domains including bioinformatics. As the volume and complexity of such data grow, there is a pressing need for computational models that…

Machine Learning · Statistics 2025-04-17 Tianjian Yang , Wei Vivian Li

In recent years, there has been a growing interest in using machine learning techniques for the estimation of treatment effects. Most of the best-performing methods rely on representation learning strategies that encourage shared behavior…

Machine Learning · Computer Science 2024-04-19 Roger Pros , Jordi Vitrià

Dimensionality reduction is critical across various domains of science including neuroscience. Probabilistic Principal Component Analysis (PPCA) is a prominent dimensionality reduction method that provides a probabilistic approach unlike…

Machine Learning · Computer Science 2025-09-24 Han-Lin Hsieh , Maryam M. Shanechi

Graph Few-Shot Class-Incremental Learning (GFSCIL) enables models to continually learn from limited samples of novel tasks after initial training on a large base dataset. Existing GFSCIL approaches typically utilize Prototypical Networks…

Machine Learning · Computer Science 2025-08-21 Jinhui Pang , Changqing Lin , Hao Lin , Zhihui Zhang , Weiping Ding , Yu Liu , Xiaoshuai Hao

Under normality and homoscedasticity assumptions, Linear Discriminant Analysis (LDA) is known to be optimal in terms of minimising the Bayes error for binary classification. In the heteroscedastic case, LDA is not guaranteed to minimise…

Machine Learning · Computer Science 2017-03-27 Kojo Sarfo Gyamfi , James Brusey , Andrew Hunt , Elena Gaura

The Linear Ballistic Accumulator (Brown & Heathcote, 2008) model is used as a measurement tool to answer questions about applied psychology. The analyses based on this model depend upon the model selected and its estimated parameters.…

Methodology · Statistics 2020-03-03 David Gunawan , Guy E. Hawkins , Minh-Ngoc Tran , Robert Kohn , Scott Brown

Feature selection poses a challenge in small-sample high-dimensional datasets, where the number of features exceeds the number of observations, as seen in microarray, gene expression, and medical datasets. There isn't a universally optimal…

Machine Learning · Computer Science 2024-07-23 Hossein Nematzadeh , Joseph Mani , Zahra Nematzadeh , Ebrahim Akbari , Radziah Mohamad

A probabilistic method of reasoning under uncertainty is proposed based on the principle of Minimum Cross Entropy (MCE) and concept of Recursive Causal Model (RCM). The dependency and correlations among the variables are described in a…

Artificial Intelligence · Computer Science 2013-04-10 Wilson X. Wen

The problem of estimating high-dimensional network models arises naturally in the analysis of many physical, biological and socio-economic systems. Examples include stock price fluctuations in financial markets and gene regulatory networks…

Methodology · Statistics 2013-10-09 Sumanta Basu , Ali Shojaie , George Michailidis

The aim of this study was to develop a method that would identify the cluster centroids and the optimal number of clusters for a given sensitivity level and could work equally well for the different sequence datasets. A novel method that…

Genomics · Quantitative Biology 2023-12-01 Manal Helal , Fanrong Kong , Sharon C-A Chen , Fei Zhou , Dominic E Dwyer , John Potter , Vitali Sintchenko

In this paper, we propose a mixture of probabilistic partial canonical correlation analysis (MPPCCA) that extracts the Causal Patterns from two multivariate time series. Causal patterns refer to the signal patterns within interactions of…

Methodology · Statistics 2017-12-13 Hiroki Mori , Keisuke Kawano , Hiroki Yokoyama

Graph contrastive learning is usually performed by first conducting Graph Data Augmentation (GDA) and then employing a contrastive learning pipeline to train GNNs. As we know that GDA is an important issue for graph contrastive learning.…

Machine Learning · Computer Science 2024-01-09 Ziyan Zhang , Bo Jiang , Jin Tang , Bin Luo

Uplift modeling is a rapidly growing approach that utilizes causal inference and machine learning methods to directly estimate the heterogeneous treatment effects, which has been widely applied to various online marketplaces to assist…

Machine Learning · Statistics 2022-09-27 Shu Wan , Chen Zheng , Zhonggen Sun , Mengfan Xu , Xiaoqing Yang , Hongtu Zhu , Jiecheng Guo

For the problem of binary linear classification and feature selection, we propose algorithmic approaches to classifier design based on the generalized approximate message passing (GAMP) algorithm, recently proposed in the context of…

Information Theory · Computer Science 2015-06-18 Justin Ziniel , Philip Schniter , Per Sederberg