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A novel procedure is described for accelerating the convergence of Markov chain Monte Carlo computations. The algorithm uses an adaptive bootstrap technique to generate candidate steps in the Markov Chain. It is efficient for symmetric,…

Numerical Analysis · Computer Science 2010-12-13 Greg Kochanski , Burton S. Rosner

Monte Carlo methods are widely used in particle physics to integrate and sample probability distributions (differential cross sections or decay rates) on multi-dimensional phase spaces. We present a Neural Network (NN) algorithm optimized…

High Energy Physics - Phenomenology · Physics 2020-10-21 Matthew D. Klimek , Maxim Perelstein

Sampling from high dimensional distributions is a computational bottleneck in many scientific applications. Hamiltonian Monte Carlo (HMC), and in particular the No-U-Turn Sampler (NUTS), are widely used, yet they struggle on problems with a…

Computation · Statistics 2025-05-20 Jakob Robnik , Reuben Cohn-Gordon , Uroš Seljak

Markov Chain Monte Carlo (MCMC) is a well-established family of algorithms primarily used in Bayesian statistics to sample from a target distribution when direct sampling is challenging. Existing work on Bayesian decision trees uses MCMC.…

Computation · Statistics 2023-01-24 Efthyvoulos Drousiotis , Paul G. Spirakis , Simon Maskell

We present a general method to convert algorithms into faster algorithms for almost-regular input instances. Informally, an almost-regular input is an input in which the maximum degree is larger than the average degree by at most a constant…

Data Structures and Algorithms · Computer Science 2022-11-22 Or Zamir

In this paper we present a novel implementation of Bayesian CMB component separation. We sample from the full posterior distribution using the No-U-Turn Sampler (NUTS), a gradient-based sampling algorithm. Alongside this, we introduce new…

Cosmology and Nongalactic Astrophysics · Physics 2024-11-19 R. D. P. Grumitt , Luke R. P. Jew , C. Dickinson

With the end of Moore's Law, there is a growing demand for rapid architectural innovations in modern processors, such as RISC-V custom extensions, to continue performance scaling. Program sampling is a crucial step in microprocessor design,…

Hardware Architecture · Computer Science 2023-04-19 Yuanwei Fang , Zihao Liu , Yanheng Lu , Jiawei Liu , Jiajie Li , Yi Jin , Jian Chen , Yenkuang Chen , Hongzhong Zheng , Yuan Xie

Particle tracking is among the most sophisticated and complex part of the full event reconstruction chain. A number of reconstruction algorithms work in a sequence to build these trajectories from detector hits. These algorithms use many…

High Energy Physics - Experiment · Physics 2023-12-11 Rocky Bala Garg , Corentin Allaire , Andreas Salzburger , Hadrien Grasland , Lauren Tompkins , Elyssa Hofgard

We introduce a general Monte Carlo method based on Nested Sampling (NS), for sampling complex probability distributions and estimating the normalising constant. The method uses one or more particles, which explore a mixture of nested…

Computation · Statistics 2012-02-27 Brendon J. Brewer , Livia B. Pártay , Gábor Csányi

We consider the problem of extracting accurate average ant trajectories from many (possibly inaccurate) input trajectories contributed by citizen scientists. Although there are many generic software tools for motion tracking and specific…

Computational Geometry · Computer Science 2014-05-16 Livio De La Cruz , Stephen Kobourov , Sergey Pupyrev , Paul Shen , Sankar Veeramoni

Non-conjugate Gaussian processes (NCGPs) define a flexible probabilistic framework to model categorical, ordinal and continuous data, and are widely used in practice. However, exact inference in NCGPs is prohibitively expensive for large…

Machine Learning · Computer Science 2025-04-18 Lukas Tatzel , Jonathan Wenger , Frank Schneider , Philipp Hennig

Many concurrent algorithms require processes to perform fetch-and-add operations on a single memory location, which can be a hot spot of contention. We present a novel algorithm called Aggregating Funnels that reduces this contention by…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-03-04 Younghun Roh , Yuanhao Wei , Eric Ruppert , Panagiota Fatourou , Siddhartha Jayanti , Julian Shun

Algorithms for community detection are usually stochastic, leading to different partitions for different choices of random seeds. Consensus clustering has proven to be an effective technique to derive more stable and accurate partitions…

Physics and Society · Physics 2019-04-23 Aditya Tandon , Aiiad Albeshri , Vijey Thayananthan , Wadee Alhalabi , Santo Fortunato

In the twilight of Moore's law, GPUs and other specialized hardware accelerators have dramatically sped up neural network training. However, earlier stages of the training pipeline, such as disk I/O and data preprocessing, do not run on…

Machine Learning · Computer Science 2020-05-11 Dami Choi , Alexandre Passos , Christopher J. Shallue , George E. Dahl

With the emergence of new technologies, computer networks are becoming more structurally complex, diverse and heterogenous. The increasing discrepancy (among the interconnected networks) in data rates, delays, packet loss, and transmission…

Networking and Internet Architecture · Computer Science 2022-01-03 Zhilbert Tafa , Veljko Milutinovic

Packet classification is a core function in software-defined networks, and learning-based methods have recently shown significant throughput gains on large-scale rulesets. However, existing learning-based approaches struggle with…

Networking and Internet Architecture · Computer Science 2026-01-07 Zhengyu Liao , Shiyou Qian

Modern accelerators use hierarchical parallel programming models that enable massive multithreading within a processing element (PE), with multiple PEs per device driven by traditional processes. Batching is a technique for exposing…

Plasma Physics · Physics 2024-09-26 Mark F. Adams , Peng Wang , Jacob Merson , Kevin Huck , Matthew G. Knepley

Sorting is a primitive operation that is a building block for countless algorithms. As such, it is important to design sorting algorithms that approach peak performance on a range of hardware architectures. Graphics Processing Units (GPUs)…

Data Structures and Algorithms · Computer Science 2017-03-31 Henri Casanova , John Iacono , Ben Karsin , Nodari Sitchinava , Volker Weichert

Markov chain Monte Carlo (MCMC) is a widely used sampling method in modern artificial intelligence and probabilistic computing systems. It involves repetitive random number generations and thus often dominates the latency of probabilistic…

Hardware Architecture · Computer Science 2023-12-12 Yihan Fu , Daijing Shi , Anjunyi Fan , Wenshuo Yue , Yuchao Yang , Ru Huang , Bonan Yan

Stochastic gradient descent-based algorithms are widely used for training deep neural networks but often suffer from slow convergence. To address the challenge, we leverage the framework of the alternating direction method of multipliers…

Machine Learning · Computer Science 2025-02-03 Ouya Wang , Shenglong Zhou , Geoffrey Ye Li