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Deep learning has become a powerful tool in computational biology, revolutionising the analysis and interpretation of biological data over time. In our article review, we delve into various aspects of deep learning in computational biology.…

Two major uncertainties, dataset bias and adversarial examples, prevail in state-of-the-art AI algorithms with deep neural networks. In this paper, we present an intuitive explanation for these issues as well as an interpretation of the…

Computer Vision and Pattern Recognition · Computer Science 2019-02-12 Yifei Fan , Anthony Yezzi

People's associations between colors and concepts influence their ability to interpret the meanings of colors in information visualizations. Previous work has suggested such effects are limited to concepts that have strong, specific…

Human-Computer Interaction · Computer Science 2023-09-22 Kushin Mukherjee , Brian Yin , Brianne E. Sherman , Laurent Lessard , Karen B. Schloss

This study explores the impact of adversarial perturbations on Convolutional Neural Networks (CNNs) with the aim of enhancing the understanding of their underlying mechanisms. Despite numerous defense methods proposed in the literature,…

Computer Vision and Pattern Recognition · Computer Science 2024-06-03 Davide Coppola , Hwee Kuan Lee

In this paper, we introduce group convolutional neural networks (GCNNs) equivariant to color variation. GCNNs have been designed for a variety of geometric transformations from 2D and 3D rotation groups, to semi-groups such as scale.…

Computer Vision and Pattern Recognition · Computer Science 2026-04-14 Yulong Yang , Felix O'Mahony , Christine Allen-Blanchette

Deep learning (DL) has revolutionized many fields such as materials design and protein folding. Recent studies have demonstrated the advantages of DL in the inverse design of structural colors, by effectively learning the complex nonlinear…

Optics · Physics 2026-05-22 Sichao Shan , Han Ye , Zhengmei Yang , Junpeng Hou , Zhitong Li

Deep learning has generated diverse perspectives in astronomy, with ongoing discussions between proponents and skeptics motivating this review. We examine how neural networks complement classical statistics, extending our data analytical…

Instrumentation and Methods for Astrophysics · Physics 2026-05-07 Yuan-Sen Ting

Deep convolutional neural networks accurately classify a diverse range of natural images, but may be easily deceived when designed, imperceptible perturbations are embedded in the images. In this paper, we design a multi-pronged training,…

Computer Vision and Pattern Recognition · Computer Science 2022-08-26 Nathaniel Dean , Dilip Sarkar

Models for image representation learning are typically designed for either recognition or generation. Various forms of contrastive learning help models learn to convert images to embeddings that are useful for classification, detection, and…

Computer Vision and Pattern Recognition · Computer Science 2026-01-21 Matthew Gwilliam , Xiao Wang , Xuefeng Hu , Zhenheng Yang

Different cell types aggregate and sort into hierarchical architectures during the formation of animal tissues. The resulting spatial organization depends (in part) on the strength of adhesion of one cell type to itself relative to other…

Quantitative Methods · Quantitative Biology 2023-08-02 Dhananjay Bhaskar , William Y. Zhang , Alexandria Volkening , Björn Sandstede , Ian Y. Wong

Generating adversarial examples is an intriguing problem and an important way of understanding the working mechanism of deep neural networks. Most existing approaches generated perturbations in the image space, i.e., each pixel can be…

Computer Vision and Pattern Recognition · Computer Science 2019-04-09 Xiaohui Zeng , Chenxi Liu , Yu-Siang Wang , Weichao Qiu , Lingxi Xie , Yu-Wing Tai , Chi Keung Tang , Alan L. Yuille

With further development in the fields of computer vision, network security, natural language processing and so on so forth, deep learning technology gradually exposed certain security risks. The existing deep learning algorithms cannot…

Cryptography and Security · Computer Science 2020-11-18 Rui Zhao

Neural networks have greatly boosted performance in computer vision by learning powerful representations of input data. The drawback of end-to-end training for maximal overall performance are black-box models whose hidden representations…

Computer Vision and Pattern Recognition · Computer Science 2020-04-29 Patrick Esser , Robin Rombach , Björn Ommer

Deep learning with a convolutional neural network (CNN) has been proved to be very effective in feature extraction and representation of images. For image classification problems, this work aim at finding which classifier is more…

Machine Learning · Computer Science 2015-06-09 Lei Zhang , David Zhang

Robustness of convolutional neural networks (CNNs) has gained in importance on account of adversarial examples, i.e., inputs added as well-designed perturbations that are imperceptible to humans but can cause the model to predict…

Computer Vision and Pattern Recognition · Computer Science 2025-07-22 Tiange Luo , Tianle Cai , Mengxiao Zhang , Siyu Chen , Di He , Liwei Wang

Deep neural networks are powerful machine learning approaches that have exhibited excellent results on many classification tasks. However, they are considered as black boxes and some of their properties remain to be formalized. In the…

Computer Vision and Pattern Recognition · Computer Science 2018-08-15 Nizar Ouarti , David Carmona

Both generative learning and discriminative learning have recently witnessed remarkable progress using Deep Neural Networks (DNNs). For structured input synthesis and structured output prediction problems (e.g., layout-to-image synthesis…

Computer Vision and Pattern Recognition · Computer Science 2021-03-16 Wei Sun , Tianfu Wu

The success of deep learning in computer vision is rooted in the ability of deep networks to scale up model complexity as demanded by challenging visual tasks. As complexity is increased, so is the need for large amounts of labeled data to…

Computer Vision and Pattern Recognition · Computer Science 2017-08-22 Gustav Larsson

Deep learning models are often considered black boxes due to their complex hierarchical transformations. Identifying suitable architectures is crucial for maximizing predictive performance with limited data. Understanding the geometric…

Machine Learning · Computer Science 2025-03-11 Michael Wienczkowski , Addisu Desta , Paschal Ugochukwu

Neural networks leverage robust internal representations in order to generalise. Learning them is difficult, and often requires a large training set that covers the data distribution densely. We study a common setting where our task is not…

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