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Recent research in molecular discovery has primarily been devoted to small, drug-like molecules, leaving many similarly important applications in material design without adequate technology. These applications often rely on more complex…

Graph model generation from natural language description is an important task with many applications in software engineering. With the rise of large language models (LLMs), there is a growing interest in using LLMs for graph model…

Software Engineering · Computer Science 2025-08-04 Boqi Chen , Ou Wei , Bingzhou Zheng , Gunter Mussbacher

In this paper, we introduce a novel interpreting framework that learns an interpretable model based on an ontology-based sampling technique to explain agnostic prediction models. Different from existing approaches, our algorithm considers…

Machine Learning · Computer Science 2020-04-02 Phung Lai , NhatHai Phan , Han Hu , Anuja Badeti , David Newman , Dejing Dou

Over the last few years, machine learning over graph structures has manifested a significant enhancement in text mining applications such as event detection, opinion mining, and news recommendation. One of the primary challenges in this…

Computation and Language · Computer Science 2019-11-26 Kayvan Bijari , Hadi Zare , Emad Kebriaei , Hadi Veisi

We focus on a conversational question answering task which combines the challenges of understanding questions in context and reasoning over evidence gathered from heterogeneous sources like text, knowledge graphs, tables, and infoboxes. Our…

Computation and Language · Computer Science 2024-07-16 Parag Jain , Mirella Lapata

An emerging way of tackling the dimensionality issues arising in the modeling of a multivariate process is to assume that the inherent data structure can be captured by a graph. Nevertheless, though state-of-the-art graph-based methods have…

Machine Learning · Statistics 2016-07-13 Andreas Loukas , Nathanael Perraudin

Graphs are an essential data structure utilized to represent relationships in real-world scenarios. Prior research has established that Graph Neural Networks (GNNs) deliver impressive outcomes in graph-centric tasks, such as link prediction…

Machine Learning · Computer Science 2024-09-12 Xubin Ren , Jiabin Tang , Dawei Yin , Nitesh Chawla , Chao Huang

Modern data introduces new challenges to classic signal processing approaches, leading to a growing interest in the field of graph signal processing. A powerful and well established model for real world signals in various domains is sparse…

Machine Learning · Computer Science 2019-03-27 Yael Yankelevsky , Michael Elad

Recent efforts leverage Large Language Models (LLMs) for modeling text-attributed graph structures in node classification tasks. These approaches describe graph structures for LLMs to understand or aggregate LLM-generated textual attribute…

Computation and Language · Computer Science 2025-05-27 Huachi Zhou , Jiahe Du , Chuang Zhou , Chang Yang , Yilin Xiao , Yuxuan Xie , Xiao Huang

Although they exist since more than ten years already, have attracted diverse implementations, and have been used successfully in a significant number of applications, declarative mapping languages for constructing knowledge graphs from…

Databases · Computer Science 2025-03-25 Sitt Min Oo , Olaf Hartig

Recently, large language models (LLMs) have been widely researched in the field of graph machine learning due to their outstanding abilities in language comprehension and learning. However, the significant gap between natural language tasks…

Artificial Intelligence · Computer Science 2024-06-21 Zhong Guan , Hongke Zhao , Likang Wu , Ming He , Jianpin Fan

Recently emerged Topological Deep Learning (TDL) methods aim to extend current Graph Neural Networks (GNN) by naturally processing higher-order interactions, going beyond the pairwise relations and local neighborhoods defined by graph…

Many real world systems need to operate on heterogeneous information networks that consist of numerous interacting components of different types. Examples include systems that perform data analysis on biological information networks; social…

Artificial Intelligence · Computer Science 2017-07-26 Parisa Kordjamshidi , Sameer Singh , Daniel Khashabi , Christos Christodoulopoulos , Mark Summons , Saurabh Sinha , Dan Roth

Knowledge graphs (KGs) can be enhanced through rule mining; however, the resulting logical rules are often difficult for humans to interpret due to their inherent complexity and the idiosyncratic labeling conventions of individual KGs. This…

Computation and Language · Computer Science 2025-08-18 Nasim Shirvani-Mahdavi , Chengkai Li

Knowledge graphs (KGs) are vital for knowledge-intensive tasks and have shown promise in reducing hallucinations in large language models (LLMs). However, constructing high-quality KGs remains difficult, requiring accurate information…

Computation and Language · Computer Science 2025-10-14 Ruirui Chen , Weifeng Jiang , Chengwei Qin , Bo Xiong , Fiona Liausvia , Dongkyu Choi , Boon Kiat Quek

Dynamic graph modeling has recently attracted much attention due to its extensive applications in many real-world scenarios, such as recommendation systems, financial transactions, and social networks. Although many works have been proposed…

Machine Learning · Computer Science 2021-05-18 Lu Wang , Xiaofu Chang , Shuang Li , Yunfei Chu , Hui Li , Wei Zhang , Xiaofeng He , Le Song , Jingren Zhou , Hongxia Yang

The growing trend of Large Language Models (LLM) development has attracted significant attention, with models for various applications emerging consistently. However, the combined application of Large Language Models with semantic…

Computation and Language · Computer Science 2023-05-09 Milena Trajanoska , Riste Stojanov , Dimitar Trajanov

One significant challenge of exploiting Graph neural networks (GNNs) in real-life scenarios is that they are always treated as black boxes, therefore leading to the requirement of interpretability. To address this, model-level…

Machine Learning · Computer Science 2025-09-22 Xiao Yue , Guangzhi Qu , Lige Gan

Modeling data lineage in relational databases remains a challenging problem, particularly in scenarios involving incomplete or missing dependencies between database objects. In this paper, we propose a novel ontology for relational database…

Databases · Computer Science 2026-05-18 Jakub Dutkiewicz , Paweł Misiorek , Robert Wrembel

The study of evolution of networks has received increased interest with the recent discovery that many real-world networks possess many things in common, in particular the manner of evolution of such networks. By adding a dimension of time…

Combinatorics · Mathematics 2010-06-24 Anurat Chapanond , Mukkai S. Krishnamoorthy , G. M. Prabhu , J. Punin