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Graph Convolutional Networks (GCNs) have been widely used due to their outstanding performance in processing graph-structured data. However, the undirected graphs limit their application scope. In this paper, we extend spectral-based graph…

Machine Learning · Computer Science 2020-04-30 Zekun Tong , Yuxuan Liang , Changsheng Sun , David S. Rosenblum , Andrew Lim

As complex networks find applications in a growing range of disciplines, the diversity of naturally occurring and model networks being studied is exploding. The adoption of a well-developed collection of network taxonomies is a natural…

Combinatorics · Mathematics 2016-01-25 Ann Sizemore , Chad Giusti , Danielle Bassett

Traditional graph analysis focuses on nodes and edges, that is, pairwise relationships. Yet many real-world networks, including biological, social, and communication networks, involve higher-order relationships in which multiple nodes…

General Mathematics · Mathematics 2026-05-15 Heitor Baldo , Luiz A. Baccalá , André Fujita , Koichi Sameshima

\"Uberhomology is a recently defined homology theory for simplicial complexes, which yields subtle information on graphs. We prove that bold homology, a certain specialisation of \"uberhomology, is related to dominating sets in graphs. To…

Algebraic Topology · Mathematics 2023-08-17 Luigi Caputi , Daniele Celoria , Carlo Collari

Hypergraphs have seen widespread application in network and data science communities in recent years. We present a survey of recent work to construct auxiliary structures from hypergraphs -- specifically simplicial, relative, and chain…

Algebraic Topology · Mathematics 2025-10-14 Ellen Gasparovic , Emilie Purvine , Radmila Sazdanovic , Bei Wang , Yusu Wang , Lori Ziegelmeier

Graph neural networks (GNNs) have recently become the standard approach for learning with graph-structured data. Prior work has shed light into their potential, but also their limitations. Unfortunately, it was shown that standard GNNs are…

Machine Learning · Computer Science 2023-06-12 Gaspard Michel , Giannis Nikolentzos , Johannes Lutzeyer , Michalis Vazirgiannis

In this paper we consider the limiting case of neural networks (NNs) architectures when the number of neurons in each hidden layer and the number of hidden layers tend to infinity thus forming a continuum, and we derive approximation errors…

Machine Learning · Computer Science 2026-05-12 Christophe Prieur , Mircea Lazar , Bogdan Robu

Recently, the growth of deep learning has produced a large number of deep neural networks. How to describe these networks unifiedly is becoming an important issue. We first formalize neural networks in a mathematical definition, give their…

Machine Learning · Computer Science 2019-03-14 Yujian Li , Chuanhui Shan

A rooted phylogenetic network is a directed acyclic graph with a single root, whose sinks correspond to a set of species. As such networks are useful for representing the evolution of species that have undergone reticulate evolution, there…

Populations and Evolution · Quantitative Biology 2022-06-28 Vincent Moulton , Taoyang Wu

First principle network models are crucial to make sense of the intricate topology of real complex networks. While modeling efforts have been quite successful in undirected networks, generative models for networks with asymmetric…

Physics and Society · Physics 2023-02-20 Antoine Allard , M. Ángeles Serrano , Marián Boguñá

Deep neural networks learn feature representations via complex geometric transformations of the input data manifold. Despite the models' empirical success across domains, our understanding of neural feature representations is still…

Machine Learning · Computer Science 2025-09-29 Moritz Hehl , Max von Renesse , Melanie Weber

Node classification is one of the hottest tasks in graph analysis. Though existing studies have explored various node representations in directed and undirected graphs, they have overlooked the distinctions of their capabilities to capture…

Machine Learning · Computer Science 2023-12-07 Seiji Maekawa , Yuya Sasaki , Makoto Onizuka

We present a new computing package Flagser, designed to construct the directed flag complex of a finite directed graph, and compute persistent homology for flexibly defined filtrations on the graph and the resulting complex. The persistent…

Algebraic Topology · Mathematics 2019-06-26 Daniel Luetgehetmann , Dejan Govc , Jason Smith , Ran Levi

During the last two decades, we easilly see that the World Wide Web's link structure is modeled as the directed graph. In this paper, we will model the World Wide Web's link structure as the directed hypergraph. Moreover, we will develop…

Social and Information Networks · Computer Science 2022-09-07 Loc Tran , Tho Quan , An Mai

Bayesian network structure learning is the notoriously difficult problem of discovering a Bayesian network that optimally represents a given set of training data. In this paper we study the computational worst-case complexity of exact…

Artificial Intelligence · Computer Science 2014-02-05 Sebastian Ordyniak , Stefan Szeider

We introduce neural networks for end-to-end differentiable proving of queries to knowledge bases by operating on dense vector representations of symbols. These neural networks are constructed recursively by taking inspiration from the…

Neural and Evolutionary Computing · Computer Science 2017-12-05 Tim Rocktäschel , Sebastian Riedel

Deep learning models have been shown to be vulnerable to adversarial attacks. This perception led to analyzing deep learning models not only from the perspective of their performance measures but also their robustness to certain types of…

Machine Learning · Computer Science 2021-10-13 M. Ben Amor , J. Stier , M. Granitzer

Graphs are commonly used to encode relationships among entities, yet their abstractness makes them difficult to analyze. Node-link diagrams are popular for drawing graphs, and force-directed layouts provide a flexible method for node…

Graphics · Computer Science 2020-01-14 Ashley Suh , Mustafa Hajij , Bei Wang , Carlos Scheidegger , Paul Rosen

We prove that the category of directed graphs and graph maps carries a cofibration category structure in which the weak equivalences are the graph maps inducing isomorphisms on path homology.

Combinatorics · Mathematics 2025-12-23 Daniel Carranza , Brandon Doherty , Chris Kapulkin , Morgan Opie , Maru Sarazola , Liang Ze Wong

We investigate structural and algorithmic advantages of a directed version of the well-researched class of distance-hereditary graphs. Since the previously defined distance-hereditary digraphs do not permit a recursive structure, we define…

Discrete Mathematics · Computer Science 2021-12-09 Dominique Komander , Carolin Rehs