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Transcript enumeration methods such as SAGE, MPSS, and sequencing-by-synthesis EST ``digital northern'', are important high-throughput techniques for digital gene expression measurement. As other counting or voting processes, these…

Quantitative Methods · Quantitative Biology 2013-10-29 Ricardo ZN Vêncio , Leonardo Varuzza , Carlos AB Pereira , Helena Brentani , Ilya Shmulevich

The evolution of many dynamical systems that describe relationships or interactions between objects can be effectively modeled by temporal networks, which are typically represented as a sequence of static network snapshots. In this paper,…

Social and Information Networks · Computer Science 2025-07-11 Filip Blašković , Tim O. F. Conrad , Stefan Klus , Nataša Djurdjevac Conrad

Despite compelling theoretical arguments, the use of clusters as cosmological probes is, in practice, frequently questioned because of the many uncertainties impinging on cluster mass estimates. Our aim is to develop a fully self-consistent…

Cosmology and Nongalactic Astrophysics · Physics 2017-11-29 M. Pierre , A. Valotti , L. Faccioli , N. Clerc , R. Gastaud , E. Koulouridis , F. Pacaud

We propose two related unsupervised clustering algorithms which, for input, take data assumed to be sampled from a uniform distribution supported on a metric space $X$, and output a clustering of the data based on the selection of a…

Machine Learning · Computer Science 2022-09-28 Antonio Rieser

High-dimensional omics datasets are routinely visualized as heatmaps, where color intensities reveal co-expression patterns and correlations. However, modern omics technologies increasingly generate matrices so large that existing visual…

Genomics · Quantitative Biology 2026-04-21 Osho Rawal , Rex Lu , Edgar Gonzalez-Kozlova , Sacha Gnjatic , Zeynep H. Gümüş

Spatial clustering has been widely used for spatial data mining and knowledge discovery. An ideal multivariate spatial clustering should consider both spatial contiguity and aspatial attributes. Existing spatial clustering approaches may…

Machine Learning · Computer Science 2022-04-01 Yuhao Kang , Kunlin Wu , Song Gao , Ignavier Ng , Jinmeng Rao , Shan Ye , Fan Zhang , Teng Fei

Nested sampling is an efficient algorithm for the calculation of the Bayesian evidence and posterior parameter probability distributions. It is based on the step-by-step exploration of the parameter space by Monte Carlo sampling with a…

Computation · Statistics 2024-01-30 M. Trassinelli , Pierre Ciccodicola

Galaxy groups and clusters are formidable cosmological probes. They permit the studying of the environmental effects on galaxy formation. A reliable detection of galaxy groups is an open problem and is important for ongoing and future…

Cosmology and Nongalactic Astrophysics · Physics 2018-10-17 Elmo Tempel , Maarja Kruuse , Rain Kipper , Taavi Tuvikene , Jenny G. Sorce , Radu S. Stoica

The existing open cluster membership determination algorithms are either prior dependent on some known parameters of clusters or are not automatable to large samples of clusters. In this paper, we present, ML-MOC, a new machine learning…

Instrumentation and Methods for Astrophysics · Physics 2021-02-16 Manan Agarwal , Khushboo K. Rao , Kaushar Vaidya , Souradeep Bhattacharya

We present a novel approach for finding and evaluating structural models of small metallic nanoparticles. Rather than fitting a single model with many degrees of freedom, the approach algorithmically builds libraries of nanoparticle…

Cluster analysis is an unsupervised learning strategy that can be employed to identify subgroups of observations in data sets of unknown structure. This strategy is particularly useful for analyzing high-dimensional data such as microarray…

Methodology · Statistics 2016-10-07 Erika S. Helgeson , Eric Bair

Co-clustering is a specific type of clustering that addresses the problem of finding groups of objects without necessarily considering all attributes. This technique has shown to have more consistent results in high-dimensional sparse data…

Machine Learning · Computer Science 2021-10-28 Yuri Santos , Jônata Tyska , Vania Bogorny

We present a detailed study of the morphological features of 22 rich galaxy clusters. Our sample is constructed from a cross-correlation of optical (Abell+APM) data with X-ray (0.1 - 2.4) keV ROSAT pointed observations. We systematically…

The primary goal in cluster analysis is to discover natural groupings of objects. The field of cluster analysis is crowded with diverse methods that make special assumptions about data and address different scientific aims. Despite its…

Genomics · Quantitative Biology 2018-06-07 Gary K. Chen , Eric Chi , John Ranola , Kenneth Lange

Functional data present unique challenges for clustering due to their infinite-dimensional nature and potential sensitivity to outliers. An extension of the OCLUST algorithm to the functional setting is proposed to address these issues. The…

Machine Learning · Statistics 2025-08-06 Katharine M. Clark , Paul D. McNicholas

The TexOx Cluster (TOC) Survey uses overdensities of radiosources in the NVSS to trace clusters of galaxies. The links between radiosources and rich environments make this a powerful way to find clusters which may potentially be overlooked…

Astrophysics · Physics 2009-11-07 Steve Croft , Steve Rawlings , Gary J. Hill

Galaxy cluster mass halos ("clusters") in a dark matter simulation are matched to nodes in several different cosmic webs found using the Disperse cosmic web finder. The webs have different simulation smoothings and Disperse parameter…

Cosmology and Nongalactic Astrophysics · Physics 2022-04-07 J. D. Cohn

Biclustering is a two way clustering approach involving simultaneous clustering along two dimensions of the data matrix. Finding biclusters of web objects (i.e. web users and web pages) is an emerging topic in the context of web usage…

Neural and Evolutionary Computing · Computer Science 2011-06-14 R. Rathipriya , Dr. K. Thangavel , J. Bagyamani

Aims. We develop, test and characterise of a new statistical tool (intelligent system) for the sifting and analysis of nearby young open cluster (NYOC) populations. Methods. Using a Bayesian formalism, this statistical tool is able to…

Solar and Stellar Astrophysics · Physics 2018-09-19 J. Olivares , L. M. Sarro , E. Moraux , A. Berihuete , H. Bouy , S. Hernandéz-Jiménez , E. Bertin , P. A. B. Galli , N. Huelamo , J. Bouvier , D. Barrado

We present a new cluster-finding algorithm based on a combination of the Voronoi Tessellation and Friends-Of-Friends methods. The algorithm utilises probability distribution functions derived from a photometric redshift analysis and is…

Astrophysics · Physics 2007-05-23 Lee Clewley , Caroline van Breukelen , David Bonfield