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In recent years, the research community, but also the general public, has raised serious questions about the reproducibility and replicability of scientific work. Since many studies include some kind of computational work, these issues are…

Software Engineering · Computer Science 2025-03-14 Lázaro Costa , Susana Barbosa , Jácome Cunha

Be it for a malicious or legitimate purpose, packing, a transformation that consists in applying various operations like compression or encryption to a binary file, i.e. for making reverse engineering harder or obfuscating code, is widely…

Cryptography and Security · Computer Science 2023-02-21 Alexandre D'Hondt , Charles-Henry Bertrand Van Ouytsel , Axel Legay

Computational science relies on scientific software as its primary instrument for scientific discovery. Therefore, similar to the use of other types of scientific instruments, correct software and the correct operation of the software is…

Software Engineering · Computer Science 2024-05-20 Akash Dhruv , Rajeev Jain , Jared O'Neal , Klaus Weide , Anshu Dubey

CONTEXT: There is growing interest in establishing software engineering as an evidence-based discipline. To that end, replication is often used to gain confidence in empirical findings, as opposed to reproduction where the goal is showing…

Software Engineering · Computer Science 2018-02-14 Martin Shepperd

This book is about conformal prediction and related inferential techniques that build on permutation tests and exchangeability. These techniques are useful in a diverse array of tasks, including hypothesis testing and providing uncertainty…

Statistics Theory · Mathematics 2026-03-09 Anastasios N. Angelopoulos , Rina Foygel Barber , Stephen Bates

The sheer scale of high-resolution raw data generated by simulation has motivated non-conventional approaches for data exploration referred as `immersive' and `in situ' query processing of the raw simulation data. Another step towards…

Databases · Computer Science 2015-08-25 Bernardo Gonçalves , Fabio Porto

The rising popularity of computational workflows is driven by the need for repetitive and scalable data processing, sharing of processing know-how, and transparent methods. As both combined records of analysis and descriptions of processing…

The reproducibility of scientific experiment is vital for the advancement of disciplines based on previous work. To achieve this goal, many researchers focus on complex methodology and self-invented tools which have difficulty in practical…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-12-29 Feng Zhao , Xingzhi Niu , Shao-Lun Huang , Lin Zhang

Over the last few years, with the growth of time-series collecting and storing, there has been a great demand for tools and software for temporal data engineering and modeling. This paper presents a generic workflow for time series data…

Computational Engineering, Finance, and Science · Computer Science 2023-10-24 Pejman Farhadi Ghalati , Andreas Schuppert

Laboratory research is a complex, collaborative process that involves several stages, including hypothesis formulation, experimental design, data generation and analysis, and manuscript writing. Although reproducibility and data sharing are…

Other Quantitative Biology · Quantitative Biology 2025-02-12 Katharine Y. Chen , Maria Toro-Moreno , Arvind Rasi Subramaniam

Computer simulations that demonstrate the valueof novel approaches are crucial to developing more flexibleand robust power systems operations with high penetrations ofrenewable energy at multiple geographic and temporal scales.However,…

Systems and Control · Electrical Eng. & Systems 2020-09-01 Jose Daniel Lara , Jonathan T. Lee , Duncan Callaway , Bri-Mathias Hodge

The increasing use of Machine Learning (ML) models to aid decision-making in high-stakes industries demands explainability to facilitate trust. Counterfactual Explanations (CEs) are ideally suited for this, as they can offer insights into…

Machine Learning · Computer Science 2025-02-20 Junqi Jiang , Luca Marzari , Aaryan Purohit , Francesco Leofante

Scientific advancement relies on the ability to share and reproduce results. When data analysis or calculations are carried out using software written by scientists there are special challenges around code versions, quality and code…

Software Engineering · Computer Science 2025-07-09 S. Lee , C. Myers , A. Yang , T. Zhang , S. J. L. Billinge

A long noted difficulty when assessing the reliability (or calibration) of forecasting systems is that reliability, in general, is a hypothesis not about a finite dimensional parameter but about an entire functional relationship. A…

Data Analysis, Statistics and Probability · Physics 2020-12-09 Jochen Bröcker

We make a case for "planetary computing" -- infrastructure to handle the ingestion, transformation, analysis and publication of global data products for furthering environmental science and enabling better informed policy-making. We draw on…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-06-04 Patrick Ferris , Michael Dales , Sadiq Jaffer , Amelia Holcomb , Eleanor Toye Scott , Thomas Swinfield , Alison Eyres , Andrew Balmford , David Coomes , Srinivasan Keshav , Anil Madhavapeddy

Scientific workflows are a cornerstone of modern scientific computing. They are used to describe complex computational applications that require efficient and robust management of large volumes of data, which are typically stored/processed…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-06-01 Tainã Coleman , Henri Casanova , Loïc Pottier , Manav Kaushik , Ewa Deelman , Rafael Ferreira da Silva

Being able to duplicate published research results is an important process of conducting research whether to build upon these findings or to compare with them. This process is called "replicability" when using the original authors'…

Digital Libraries · Computer Science 2020-05-07 Nicolas Bonneel , David Coeurjolly , Julie Digne , Nicolas Mellado

Robust estimation provides essential tools for analyzing data that contain outliers, ensuring that statistical models remain reliable even in the presence of some anomalous data. While robust methods have long been available in R, users of…

Computation · Statistics 2024-11-05 Sarah Leyder , Jakob Raymaekers , Peter J. Rousseeuw , Thomas Servotte , Tim Verdonck

Academic trade requires juggling multiple variants of the same content published in different formats: manuscripts, presentations, posters and computational notebooks. The need to track versions to accommodate for the…

Programming Languages · Computer Science 2021-07-15 Kacper Sokol , Peter Flach

Those seeking to reproduce a computational experiment often need to manually look at the code to see how to build necessary libraries, configure parameters, find data, and invoke the experiment; it is not automatic. Automatic…

Software Engineering · Computer Science 2023-07-24 Samuel Grayson , Reed Milewicz , Joshua Teves , Daniel S. Katz , Darko Marinov