Related papers: Optimal Codes Correcting a Single Indel / Edit for…
DNA storage systems face significant challenges, including insertion, deletion, and substitution (IDS) errors. Therefore, designing effective synchronization codes, i.e., codes capable of correcting IDS errors, is essential for DNA storage…
Motivated by DNA storage systems and 3D fingerprinting, this work studies the adversarial torn paper channel with edit errors. This channel first applies at most $t_e$ edit errors (i.e., insertions, deletions, and substitutions) to the…
A problem of index coding with side information was first considered by Y. Birk and T. Kol (IEEE INFOCOM, 1998). In the present work, a generalization of index coding scheme, where transmitted symbols are subject to errors, is studied.…
The ability to store data in the DNA of a living organism has applications in a variety of areas including synthetic biology and watermarking of patented genetically-modified organisms. Data stored in this medium is subject to errors…
The problem of error correction in both coherent and noncoherent network coding is considered under an adversarial model. For coherent network coding, where knowledge of the network topology and network code is assumed at the source and…
In this paper we are interested in indexing texts for substring matching queries with one edit error. That is, given a text $T$ of $n$ characters over an alphabet of size $\sigma$, we are asked to build a data structure that answers the…
DNA, with remarkable properties of high density, durability, and replicability, is one of the most appealing storage media. Emerging DNA storage technologies use composite DNA letters, where information is represented by probability…
Motivated by communication channels in which the transmitted sequences are subject to random permutations, as well as by certain DNA storage systems, we study the error control problem in settings where the information is stored/transmitted…
We give an explicit construction of length-$n$ binary codes capable of correcting the deletion of two bits that have size $2^n/n^{4+o(1)}$. This matches up to lower order terms the existential result, based on an inefficient greedy choice…
In [1], the authors proposed a new model of DNA storage system that integrates all three steps of retrieval and introduced the concept of DNA-correcting codes, which guarantees that the output of the storage system can be decoded to the…
Burst errors involving simultaneous insertions, deletions, and substitutions occur in practical scenarios, including DNA data storage and document synchronization, motivating developments of channel codes that can correct such errors. In…
When digital data are transmitted over a noisy channel, it is important to have a mechanism allowing recovery against a limited number of errors. Normally, a user string of 0's and 1's, called bits, is encoded by adding a number of…
Block encodings are a fundamental primitive in quantum algorithms, but can often have large ancilla overhead. In this work, we introduce novel techniques for reducing this overhead in two distinct ways. In Part I, we prove the existence of…
We study a class of linear network coding (LNC) schemes, called circular-shift LNC, whose encoding operations consist of only circular-shifts and bit-wise additions (XOR). Formulated as a special vector linear code over GF($2$), an…
Codes in the Damerau--Levenshtein metric have been extensively studied recently owing to their applications in DNA-based data storage. In particular, Gabrys, Yaakobi, and Milenkovic (2017) designed a length-$n$ code correcting a single…
In this work, we introduce convolutional codes for network-error correction in the context of coherent network coding. We give a construction of convolutional codes that correct a given set of error patterns, as long as consecutive errors…
We study uniquely decodable codes and list decodable codes in the high-noise regime, specifically codes that are uniquely decodable from $\frac{1-\varepsilon}{2}$ fraction of errors and list decodable from $1-\varepsilon$ fraction of…
Insdel errors occur in communication systems caused by the loss of positional information of the message. Since the work by Guruswami and Wang, there have been some further investigations on the list decoding of insertion codes, deletion…
While achieving a compression ratio of 2.0 bits/base, the new algorithm codes non-N bases in fixed length. It dramatically reduces the time of coding and decoding than previous DNA compression algorithms and some universal compression…
Boolean cardinality constraints state that at most (at least, or exactly) $k$ out of $n$ propositional literals can be true. We propose a new class of selection networks that can be used for an efficient encoding of them. Several comparator…