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With the increasing availability of patient data, modern medicine is shifting towards prospective healthcare. Electronic health records offer a variety of information useful for clinical patient characterization and the development of…
Mental illnesses adversely affect a significant proportion of the population worldwide. However, the methods traditionally used for estimating and characterizing the prevalence of mental health conditions are time-consuming and expensive.…
Assessing the degree of semantic relatedness between words is an important task with a variety of semantic applications, such as ontology learning for the Semantic Web, semantic search or query expansion. To accomplish this in an automated…
Early diagnosis of disease can lead to improved health outcomes, including higher survival rates and lower treatment costs. With the massive amount of information available in electronic health records (EHRs), there is great potential to…
Though word embeddings and topics are complementary representations, several past works have only used pre-trained word embeddings in (neural) topic modeling to address data sparsity problem in short text or small collection of documents.…
Sepsis is an important cause of mortality, especially in intensive care unit (ICU) patients. Developing novel methods to identify early mortality is critical for improving survival outcomes in sepsis patients. Using the MIMIC-III database,…
Syntactic structure of sentences in a document substantially informs about its authorial writing style. Sentence representation learning has been widely explored in recent years and it has been shown that it improves the generalization of…
Electronic health record (EHR) systems are used extensively throughout the healthcare domain. However, data interchangeability between EHR systems is limited due to the use of different coding standards across systems. Existing methods of…
Semantic Embeddings are a popular way to represent knowledge in the field of zero-shot learning. We observe their interpretability and discuss their potential utility in a safety-critical context. Concretely, we propose to use them to add…
Automatic extraction of clinical concepts is an essential step for turning the unstructured data within a clinical note into structured and actionable information. In this work, we propose a clinical concept extraction model for automatic…
Sentence embeddings encode natural language sentences as low-dimensional dense vectors. A great deal of effort has been put into using sentence embeddings to improve several important natural language processing tasks. Relation extraction…
Past studies on the ICD coding problem focus on predicting clinical codes primarily based on the discharge summary. This covers only a small fraction of the notes generated during each hospital stay and leaves potential for improving…
Accurate mortality prediction allows Intensive Care Units (ICUs) to adequately benchmark clinical practice and identify patients with unexpected outcomes. Traditionally, simple statistical models have been used to assess patient death risk,…
Representation learning methods that transform encoded data (e.g., diagnosis and drug codes) into continuous vector spaces (i.e., vector embeddings) are critical for the application of deep learning in healthcare. Initial work in this area…
Intracerebral hemorrhage (ICH) is the most fatal subtype of stroke and is characterized by a high incidence of disability. Accurate segmentation of the ICH region and prognosis prediction are critically important for developing and refining…
Scientific document summarization has been a challenging task due to the long structure of the input text. The long input hinders the simultaneous effective modeling of both global high-order relations between sentences and local…
Electronic health records (EHRs) form an invaluable resource for training clinical decision support systems. To leverage the potential of such systems in high-risk applications, we need large, structured tabular datasets on which we can…
Early detection of preventable diseases is important for better disease management, improved inter-ventions, and more efficient health-care resource allocation. Various machine learning approacheshave been developed to utilize information…
Previous work on clinical relation extraction from free-text sentences leveraged information about semantic types from clinical knowledge bases as a part of entity representations. In this paper, we exploit additional evidence by also…
Deep learning has demonstrated success in many applications; however, their use in healthcare has been limited due to the lack of transparency into how they generate predictions. Algorithms such as Recurrent Neural Networks (RNNs) when…