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Navigating the complex landscape of single-cell transcriptomic data presents significant challenges. Central to this challenge is the identification of a meaningful representation of high-dimensional gene expression patterns that sheds…

Quantitative Methods · Quantitative Biology 2023-12-13 Mu Qiao

Clustering high-dimensional datasets is hard because interpoint distances become less informative in high-dimensional spaces. We present a clustering algorithm that performs nonlinear dimensionality reduction and clustering jointly. The…

Machine Learning · Computer Science 2018-03-06 Sohil Atul Shah , Vladlen Koltun

Cluster analysis methods are used to identify homogeneous subgroups in a data set. In biomedical applications, one frequently applies cluster analysis in order to identify biologically interesting subgroups. In particular, one may wish to…

Methodology · Statistics 2016-09-23 Sheila Gaynor , Eric Bair

Similarity-based clustering methods separate data into clusters according to the pairwise similarity between the data, and the pairwise similarity is crucial for their performance. In this paper, we propose {\em Clustering by Discriminative…

Machine Learning · Computer Science 2022-06-24 Yingzhen Yang , Ping Li

Clustering is a fundamental problem in data analysis. In differentially private clustering, the goal is to identify $k$ cluster centers without disclosing information on individual data points. Despite significant research progress, the…

Machine Learning · Computer Science 2021-12-30 Edith Cohen , Haim Kaplan , Yishay Mansour , Uri Stemmer , Eliad Tsfadia

Identifying relationships between molecular variations and their clinical presentations has been challenged by the heterogeneous causes of a disease. It is imperative to unveil the relationship between the high dimensional molecular…

Methodology · Statistics 2021-09-02 Wennan Chang , Changlin Wan , Yong Zang , Chi Zhang , Sha Cao

We discuss topological aspects of cluster analysis and show that inferring the topological structure of a dataset before clustering it can considerably enhance cluster detection: theoretical arguments and empirical evidence show that…

Machine Learning · Computer Science 2022-07-04 Moritz Herrmann , Daniyal Kazempour , Fabian Scheipl , Peer Kröger

Pairwise clustering, in general, partitions a set of items via a known similarity function. In our treatment, clustering is modeled as a transductive prediction problem. Thus rather than beginning with a known similarity function, the…

Machine Learning · Computer Science 2017-06-21 Stephen Pasteris , Fabio Vitale , Claudio Gentile , Mark Herbster

Subspace clustering refers to the problem of clustering high-dimensional data into a union of low-dimensional subspaces. Current subspace clustering approaches are usually based on a two-stage framework. In the first stage, an affinity…

Machine Learning · Computer Science 2019-10-22 Shuai Yang , Wenqi Zhu , Yuesheng Zhu

In this paper, we present a deep extension of Sparse Subspace Clustering, termed Deep Sparse Subspace Clustering (DSSC). Regularized by the unit sphere distribution assumption for the learned deep features, DSSC can infer a new data…

Computer Vision and Pattern Recognition · Computer Science 2017-09-26 Xi Peng , Jiashi Feng , Shijie Xiao , Jiwen Lu , Zhang Yi , Shuicheng Yan

Urban structure detection is a basic task in urban geography. Clustering is a core technology to detect the patterns of urban spatial structure, urban functional region, and so on. In big data era, diverse urban sensing datasets recording…

Social and Information Networks · Computer Science 2017-07-13 Xin Lin , Haifeng Li , Yan Zhang , Lei Gao , Ling Zhao , Min Deng

High-dimensional data often exhibit variation that can be captured by lower dimensional factors. For high-dimensional data from multiple studies or environments, one goal is to understand which underlying factors are common to all studies,…

Machine Learning · Statistics 2026-01-27 Gemma E. Moran , Anandi Krishnan

Cluster analysis is a popular unsupervised learning tool used in many disciplines to identify heterogeneous sub-populations within a sample. However, validating cluster analysis results and determining the number of clusters in a data set…

Machine Learning · Statistics 2024-04-26 Ali Turfah , Xiaoquan Wen

Spectral-based subspace clustering methods have proved successful in many challenging applications such as gene sequencing, image recognition, and motion segmentation. In this work, we first propose a novel spectral-based subspace…

Machine Learning · Statistics 2021-06-09 Hankui Peng , Nicos G. Pavlidis

We present LSD-C, a novel method to identify clusters in an unlabeled dataset. Our algorithm first establishes pairwise connections in the feature space between the samples of the minibatch based on a similarity metric. Then it regroups in…

Computer Vision and Pattern Recognition · Computer Science 2020-06-18 Sylvestre-Alvise Rebuffi , Sebastien Ehrhardt , Kai Han , Andrea Vedaldi , Andrew Zisserman

In clustering we normally output one cluster variable for each datapoint. However it is not necessarily the case that there is only one way to partition a given dataset into cluster components. For example, one could cluster objects by…

Machine Learning · Computer Science 2019-12-05 Matthew Willetts , Stephen Roberts , Chris Holmes

We propose an algorithm for clustering high dimensional data. If $P$ features for $N$ objects are represented in an $N\times P$ matrix ${\bf X}$, where $N\ll P$, the method is based on exploiting the cluster-dependent structure of the…

Machine Learning · Statistics 2018-11-05 Shahina Rahman , Valen E. Johnson

The rapid emergence of high-dimensional data in various areas has brought new challenges to current ensemble clustering research. To deal with the curse of dimensionality, recently considerable efforts in ensemble clustering have been made…

Machine Learning · Computer Science 2021-09-07 Dong Huang , Chang-Dong Wang , Jian-Huang Lai , Chee-Keong Kwoh

Clustering is one of the fundamental tasks in computer vision and pattern recognition. Recently, deep clustering methods (algorithms based on deep learning) have attracted wide attention with their impressive performance. Most of these…

Computer Vision and Pattern Recognition · Computer Science 2021-06-14 Yanhai Gan , Xinghui Dong , Huiyu Zhou , Feng Gao , Junyu Dong

The success of deep learning in high-dimensional settings is often attributed to the presence of low-dimensional structure in real-world data. While standard theoretical models typically assume that this structure lies in the target…

Machine Learning · Computer Science 2026-05-15 Elisabetta Cornacchia , Laurent Massoulié
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