English
Related papers

Related papers: Model-based process design of a ternary protein se…

200 papers

State Space Models (SSMs) have emerged as a compelling alternative to attention models for long-range vision tasks, offering input-dependent recurrence with linear complexity. However, most efficient SSM variants reduce computation cost by…

Computer Vision and Pattern Recognition · Computer Science 2026-05-13 Sara Shoouri , Morteza Tavakoli Taba , Hun-Seok Kim

We propose a kinetic Ising model to study phase separation driven by surface diffusion. This model is referred to as "Model S", and consists of the usual Kawasaki spin-exchange kinetics ("Model B") in conjunction with a kinetic constraint.…

Statistical Mechanics · Physics 2015-06-24 S. van Gemmert , G. T. Barkema , Sanjay Puri

Region-based methods have proven necessary for improving segmentation accuracy of neuronal structures in electron microscopy (EM) images. Most region-based segmentation methods use a scoring function to determine region merging. Such…

Computer Vision and Pattern Recognition · Computer Science 2018-04-04 Ting Liu , Miaomiao Zhang , Mehran Javanmardi , Nisha Ramesh , Tolga Tasdizen

In the field of healthcare, precise skin lesion segmentation is crucial for the early detection and accurate diagnosis of skin diseases. Despite significant advances in deep learning for image processing, existing methods have yet to…

Computer Vision and Pattern Recognition · Computer Science 2025-12-09 Siyu Wang , Hua Wang , Huiyu Li , Fan Zhang

We propose a novel class of Sequential Monte Carlo (SMC) algorithms, appropriate for inference in probabilistic graphical models. This class of algorithms adopts a divide-and-conquer approach based upon an auxiliary tree-structured…

We study the first order phase transition of the fixed-connectivity triangulated surface model using the Parallel Tempering Monte Carlo (PTMC) technique on relatively large lattices. From the PTMC results, we find that the transition is…

Soft Condensed Matter · Physics 2016-01-29 Satoshi Usui , Hiroshi Koibuchi

Linear models are regularly used for mapping cores to tiles in a chip. System-on-Chip (SoC) design requires integration of functional units with varying sizes, but conventional models only account for identical-sized cores. Linear models…

Signal Processing · Electrical Eng. & Systems 2019-05-17 Jan Moritz Joseph , Dominik Ermel , Tobias Drewes , Lennart Bamberg , Alberto Garcia-Oritz , Thilo Pionteck

Bayesian hierarchical modeling is a popular approach to capturing unobserved heterogeneity across individual units. However, standard estimation methods such as Markov chain Monte Carlo (MCMC) can be impracticable for modeling outcomes from…

Methodology · Statistics 2014-11-04 Michael Braun , Paul Damien

In the last two decades, several methods based on sequential Monte Carlo (SMC) and Markov chain Monte Carlo (MCMC) have been proposed for Bayesian identification of stochastic non-linear state-space models (SSMs). It is well known that the…

Applications · Statistics 2013-07-25 Aditya Tulsyan , Biao Huang , R. Bhushan Gopaluni , J. Fraser Forbes

Bayesian inference for doubly-intractable pairwise exponential graphical models typically involves variations of the exchange algorithm or approximate Markov chain Monte Carlo (MCMC) samplers. However, existing methods for both classes of…

Computation · Statistics 2026-03-30 Yujie Chen , Antik Chakraborty , Anindya Bhadra

In this study, we introduce a multi-modal approach that efficiently integrates multi-scale clinical and dermoscopy features within a single network, thereby substantially reducing model parameters. The proposed method includes three novel…

Image and Video Processing · Electrical Eng. & Systems 2024-03-31 Peng Tang , Tobias Lasser

Numerical methods are proposed for an advanced Poisson-Nernst-Planck-Fermi (PNPF) model for studying ion transport through biological ion channels. PNPF contains many more correlations than most models and simulations of channels, because…

Biomolecules · Quantitative Biology 2015-06-22 Jinn-Liang Liu , Bob Eisenberg

Integrated sensing and communication (ISAC) is one of the usage scenarios for the sixth generation (6G) wireless networks. In this paper, we study cooperative ISAC in cell-free multiple-input multiple-output (MIMO) systems, where multiple…

Signal Processing · Electrical Eng. & Systems 2024-10-15 Zihuan Wang , Vincent W. S. Wong

Triboelectric charging of insulating particles through contact is critical in diverse physical and engineering processes, from dust storms and volcanic eruptions to industrial powder handling. However, many experiments over the years have…

Computational Physics · Physics 2025-12-30 Holger Grosshans , Gizem Ozler , Simon Jantač

Markov state models (MSMs) have been demonstrated to be a powerful method for computationally studying intramolecular processes such as protein folding and macromolecular conformational changes. In this article, we present a new approach to…

Biological Physics · Physics 2015-06-18 Matthew R. Perkett , Michael F. Hagan

Enzymes and proteins are live driven biochemicals, which has a dramatic impact over the environment, in which it is active. So, therefore, it is highly looked-for to build such a robust and highly accurate automatic and computational model…

Biomolecules · Quantitative Biology 2021-01-11 Zaheer Ullah Khan , Dechang Pi , Izhar Ahmed Khan , Asif Nawaz , Jamil Ahmad , Mushtaq Hussain

Over decades, Markov chain Monte Carlo (MCMC) methods have been widely studied, with a typical application being the quantification of posterior uncertainties in Bayesian system identification of structural dynamic models. To address the…

Applications · Statistics 2026-04-28 Xianghao Meng , Yong Huang , James L. Beck , Kui Jiang , Hui Li

A multiscale numerical solver called the seamless-domain method (SDM) is used in linear heat conduction analysis of nonperiodic simulated fields. The practical feasibility of the SDM has been verified for use with periodic fields but has…

Numerical Analysis · Mathematics 2019-12-18 Yoshiro Suzuki

We argue for the use of separate exchangeability as a modeling principle in Bayesian nonparametric (BNP) inference. Separate exchangeability is de facto widely applied in the Bayesian parametric case, e.g., it naturally arises in simple…

Methodology · Statistics 2025-07-29 Giovanni Rebaudo , Qiaohui Lin , Peter Mueller

Fabric defect detection is a crucial quality control step in the textile manufacturing industry. In this article, machine vision system based on the Sylvester Matrix Based Similarity Method (SMBSM) is proposed to automate the defect…

Computer Vision and Pattern Recognition · Computer Science 2021-01-22 R. M. L. N. Kumari , G. A. C. T. Bandara , Maheshi B. Dissanayake