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Topological data analysis is becoming increasingly relevant to support the analysis of unstructured data sets. A common assumption in data analysis is that the data set is a sample---not necessarily a uniform one---of some high-dimensional…

Algebraic Topology · Mathematics 2021-01-20 Bastian Rieck , Markus Banagl , Filip Sadlo , Heike Leitte

Self-consistent chaotic transport is studied in a Hamiltonian mean-field model. The model provides a simplified description of transport in marginally stable systems including vorticity mixing in strong shear flows and electron dynamics in…

Dynamical Systems · Mathematics 2016-01-11 D. Martínez-del-Río , D. del-Castillo-Negrete , A. Olvera , R. Calleja

Simulations of chaotic systems can only produce high-fidelity trajectories if the initial and boundary conditions are well specified. When these conditions are unknown but measurements are available, variational state estimation can…

Dynamical Systems · Mathematics 2026-05-29 Noah B. Frank , Joshua L. Pughe-Sanford , Samuel J. Grauer

Large amplitude gust encounters exhibit a range of separated flow phenomena, making them difficult to characterize using the traditional tools of aerodynamics. In this work, we propose a dynamical systems approach to gust encounters,…

Fluid Dynamics · Physics 2024-11-20 Luke Smith , Kai Fukami , Girguis Sedky , Anya Jones , Kunihiko Taira

A general method for constructing simplicial complex from observed time series of dynamical systems based on the delay coordinate reconstruction procedure is presented. The obtained simplicial complex preserves all pertinent topological…

Chaotic Dynamics · Physics 2016-06-22 Slobodan Maletic , Yi Zhao , Milan Rajkovic

We apply persistent homology, the dominant tool from the field of topological data analysis, to study electoral redistricting. Our method combines the geographic information from a political districting plan with election data to produce a…

Algebraic Topology · Mathematics 2020-07-07 Moon Duchin , Tom Needham , Thomas Weighill

The continuous and discrete symmetries of the Kuramoto-Sivashinsky system restricted to a spatially periodic domain play a prominent role in shaping the invariant sets of its chaotic dynamics. The continuous spatial translation symmetry…

Chaotic Dynamics · Physics 2010-04-06 Predrag Cvitanović , Ruslan L. Davidchack , Evangelos Siminos

The study of phase transitions using data-driven approaches is challenging, especially when little prior knowledge of the system is available. Topological data analysis is an emerging framework for characterizing the shape of data and has…

Statistical Mechanics · Physics 2021-05-26 Quoc Hoan Tran , Mark Chen , Yoshihiko Hasegawa

In this study, we introduce novel methodologies designed to adapt original data in response to the dynamics of persistence diagrams along Wasserstein gradient flows. Our research focuses on the development of algorithms that translate…

Algebraic Topology · Mathematics 2024-12-06 Minghua Wang , Jinhui Xu

We introduce topological methods for quantifying spatially heterogeneous dynamics, and use these tools to analyze particle-tracking data for a quasi-two-dimensional granular system of air-fluidized beads on approach to jamming. In…

Soft Condensed Matter · Physics 2007-08-30 A. R. Abate , D. J. Durian

In this numerical study, recurrence quantification analysis of chaotic trajectories is explored to detect atypical dynamical behaviour in non-linear Hamiltonian systems. An ensemble of initial conditions is evolved up to a maximum iteration…

Chaotic Dynamics · Physics 2025-07-11 Matheus S. Palmero , Flavio H. Graciano , Edson D. Leonel , Juliano A. de Oliveira

Symmetry reduction by the method of slices quotients the continuous symmetries of chaotic flows by replacing the original state space by a set of charts, each covering a neighborhood of a dynamically important class of solutions,…

We present a pipeline for characterizing and constraining initial conditions in cosmology via persistent homology. The cosmological observable of interest is the cosmic web of large scale structure, and the initial conditions in question…

Cosmology and Nongalactic Astrophysics · Physics 2020-12-08 Alex Cole , Matteo Biagetti , Gary Shiu

By their nature it is difficult to differentiate chaotic dynamical systems through measurement. In recent years, work has begun on using methods of Topological Data Analysis (TDA) to qualitatively type dynamical data by approximating the…

Algebraic Topology · Mathematics 2026-04-14 Tobias Timofeyev , Christopher Potvin , Benjamin Jones , Kristin M. Kurianski , Miguel Lopez , Sunia Tanweer

Recent progress of symbolic dynamics of one- and especially two-dimensional maps has enabled us to construct symbolic dynamics for systems of ordinary differential equations (ODEs). Numerical study under the guidance of symbolic dynamics is…

chao-dyn · Physics 2009-10-30 Bai-lin Hao , Jun-xian Liu , Wei-mou Zheng

This study evaluates data-driven models from a dynamical system perspective, such as unstable fixed points, periodic orbits, chaotic saddle, Lyapunov exponents, manifold structures, and statistical values. We find that these dynamical…

Dynamical Systems · Mathematics 2021-11-10 Miki U Kobayashi , Kengo Nakai , Yoshitaka Saiki , Natsuki Tsutsumi

We characterize structures such as monotonicity, convexity, and modality in smooth regression curves using persistent homology. Persistent homology is a key tool in topological data analysis that detects higher-dimensional topological…

Algebraic Topology · Mathematics 2025-10-28 Satish Kumar , Subhra Sankar Dhar

Quasistationarity is ubiquitous in complex dynamical systems. In brain dynamics there is ample evidence that event-related potentials reflect such quasistationary states. In order to detect them from time series, several segmentation…

Chaotic Dynamics · Physics 2015-06-23 Peter beim Graben , Axel Hutt

Certain deterministic non-linear systems may show chaotic behaviour. Time series derived from such systems seem stochastic when analyzed with linear techniques. However, uncovering the deterministic structure is important because it allows…

chao-dyn · Physics 2008-02-03 Dimitris Kugiumtzis , Bjoern Lillekjendlie , Nils Christophersen

Spatial transcriptomics studies are becoming increasingly large and commonplace, necessitating simultaneous analysis of a large number of spatially resolved variables. Correspondingly, a diverse range of methodologies have been proposed to…

Quantitative Methods · Quantitative Biology 2025-09-09 James Boyle , Gregory Hamm , Eleanor Williams , Robin JG Hartman , Magnus Soderburg , Ian Henry , Michael Casey