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We model proteins with intramolecular bonds, such as disulfide bridges, using the concept of bonded knots -- closed loops in three-dimensional space equipped with additional bonds that connect different segments of the knot. We extend the…

Geometric Topology · Mathematics 2025-02-27 Boštjan Gabrovšek , Matic Simonič

Given any oriented link diagram, one can construct knot invariants using skein relations. Usually such a skein relation contains three or four terms. In this paper, the author introduces several new ways to smooth a crossings, and uses a…

Geometric Topology · Mathematics 2017-03-20 Zhiqing Yang

Colored HOMFLY-PT invariant, the generalization of the colored Jones polynomial, is one of the most important quantum invariants of links. This paper is devoted to investigating the basic structures of the colored HOMFLY-PT invariants of…

Geometric Topology · Mathematics 2015-11-17 Qingtao Chen , Kefeng Liu , Pan Peng , Shengmao Zhu

Given any oriented link diagram, two types of new knot invariants are constructed. They satisfy some generalized skein relations. The coefficients of each invariant is from a commutative ring. Homomorphisms and representations of those…

Geometric Topology · Mathematics 2011-05-10 Zhiqing Yang

In this paper, we present several new structures for the colored HOMFLY-PT invariants of framed links. First, we prove the strong integrality property for the normalized colored HOMFLY-PT invariants by purely using the HOMFLY-PT skein…

Geometric Topology · Mathematics 2021-06-08 Shengmao Zhu

New invariants of links are constructed using the skein invariant polynomial of colored links defined by the author in [1]. These invariants are stronger than the homflypt polynomial.

Geometric Topology · Mathematics 2015-12-11 Francesca Aicardi

We provide methods to compute the colored HOMFLY polynomials of knots and links with symmetric representations based on the linear skein theory. By using diagrammatic calculations, several formulae for the colored HOMFLY polynomials are…

Geometric Topology · Mathematics 2012-11-19 Kenichi Kawagoe

We present a systematic classification of uncolored bonded knots with singularity number at most seven. Bonded knots provide a topological model for closed protein chains with intramolecular bridges, such as disulfide bonds. Following the…

Geometric Topology · Mathematics 2026-03-20 Boštjan Gabrovšek , Matic Simonič , Wanda Niemyska

This article introduces a natural extension of colouring numbers of knots, called colouring polynomials, and studies their relationship to Yang-Baxter invariants and quandle 2-cocycle invariants. For a knot K in the 3-sphere let \pi_K be…

Geometric Topology · Mathematics 2007-11-20 Michael Eisermann

Many knots and links in S^3 can be drawn as gluing of three manifolds with one or more four-punctured S^2 boundaries. We call these knot diagrams as double fat graphs whose invariants involve only the knowledge of the fusion and the…

High Energy Physics - Theory · Physics 2015-07-30 A. Mironov , A. Morozov , An. Morozov , P. Ramadevi , Vivek Kumar Singh

We construct a new family of knot concordance invariants $\theta^{(q)}(K)$, where $q$ is a prime number. Our invariants are obtained from the equivariant Seiberg-Witten-Floer cohomology, constructed by the author and Hekmati, applied to the…

Geometric Topology · Mathematics 2024-09-04 David Baraglia

We propose a new, precise integrality conjecture for the colored Kauffman polynomial of knots and links inspired by large N dualities and the structure of topological string theory on orientifolds. According to this conjecture, the natural…

High Energy Physics - Theory · Physics 2014-11-18 Marcos Marino

This paper contains linear systems of equations which can distinguish knots without knot invariants. Let $M_n$ be the topological moduli space of all n-component string links and such that a fixed projection into the plane is an immersion.…

Geometric Topology · Mathematics 2025-09-22 Thomas Fiedler , Butian Zhang

We conjecture the existence of four independent gradings in the colored HOMFLY homology. We describe these gradings explicitly for the rectangular colored homology of torus knots and make qualitative predictions of various interesting…

Quantum Algebra · Mathematics 2013-04-15 Eugene Gorsky , Sergei Gukov , Marko Stosic

In this paper, we extend the definition of a knotoid that was introduced by Turaev, to multi-linkoids that consist of a number of knot and knotoid components. We study invariants of multi-linkoids that lie in a closed orientable surface,…

Geometric Topology · Mathematics 2022-05-27 Boštjan Gabrovšek , Neslihan Gügümcü

In this paper, we investigate the properties of the full colored HOMFLYPT invariants in the full skein of the annulus $\mathcal{C}$. We show that the full colored HOMFLYPT invariant has a nice structure when $q\rightarrow 1$. The composite…

Quantum Algebra · Mathematics 2014-10-09 Qingtao Chen , Shengmao Zhu

This work is dedicated to the consideration of the construction of a representation of braid group generators from vertex models with $N$-states, which provides a great way to study the knot invariant. An algebraic formula is proposed for…

Statistical Mechanics · Physics 2022-04-20 T. K. Kassenova , P. Tsyba , O. Razina , R. Myrzakulov

We present a topological interpretation of knot and braid contact homology in degree zero, in terms of cords and skein relations. This interpretation allows us to extend the knot invariant to embedded graphs and higher-dimensional knots. We…

Geometric Topology · Mathematics 2014-11-11 Lenhard Ng

We introduce new skein invariants of links based on a procedure where we first apply the skein relation only to crossings of distinct components, so as to produce collections of unlinked knots. We then evaluate the resulting knots using a…

Geometric Topology · Mathematics 2019-04-04 Louis H. Kauffman , Sofia Lambropoulou

We propose a new non-commutative generalization of the representation variety and the character variety of a knot group. Our strategy is to reformulate the construction of the algebra of functions on the space of representations in terms of…

Geometric Topology · Mathematics 2022-12-01 Jun Murakami , Roland van der Veen
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