English
Related papers

Related papers: Does inter-organellar proteostasis impact yeast qu…

200 papers

Magnetic stresses collimate protostellar winds into a common distribution of force with angle. Sweeping into the ambient medium, such winds drive bipolar molecular outflows whose properties are insensitive to the distribution of ambient gas…

Astrophysics · Physics 2007-05-23 Christopher D. Matzner

Motivation: DNA methylation is an intensely studied epigenetic mark, yet its functional role is incompletely understood. Attempts to quantitatively associate average DNA methylation to gene expression yield poor correlations outside of the…

Genomics · Quantitative Biology 2016-11-17 Chantriolnt-Andreas Kapourani , Guido Sanguinetti

Predictive modeling is the key factor for saving time and resources with respect to manufacturing processes such as fermentation processes arising e.g.\ in food and chemical manufacturing processes. According to Zhang et al. (2002), the…

Analysis of PDEs · Mathematics 2021-04-15 Christina Schenk , Volker H. Schulz

Molecular-motor generated active stresses drive the cytoskeleton away from equilibrium, endowing it with tunable mechanical properties that are essential for diverse functions such as cell division and motility[1-5]. Designing analogous…

It is speculated that there might be some linkage between interstellar aldehydes and their corresponding alcohols. Here, an observational study and astrochemical modeling are coupled together to illustrate the connection between them. The…

The regulation of cellular function is often controlled at the level of gene transcription. Such genetic regulation usually consists of interacting networks, whereby gene products from a single network can act to control their own…

Biological Physics · Physics 2009-11-06 Jeff Hasty , Joel Pradines , Milos Dolnik , J. J. Collins

Customisation in food properties is a challenging task involving optimisation of the production process with the demand to support computational creativity which is geared towards ensuring the presence of alternatives. This paper addresses…

Neural and Evolutionary Computing · Computer Science 2020-04-08 Mohammad Majid al-Rifaie , Marc Cavazza

Elasto-inertial turbulence (EIT) is primarily driven by polymer elasticity, yet the modulating role of fluid inertia is non-negligible and remains largely unexplored. To investigate the effect of inertia, we perform direct numerical…

Fluid Dynamics · Physics 2026-04-24 Haotian Cheng , Hongna Zhang , Wenhua Zhang , Yuke Li , Xiaobin Li , Fengchen Li

Sterols have been ascribed a major role in the organization of biological membranes, in particular for the formation of liquid ordered domains in complex lipid mixtures. Here, we employed molecular dynamics simulations to compare the…

Biological Physics · Physics 2021-07-13 Azadeh Alavizargar , Fabian Keller , R. Wedlich-Söldner , Andreas Heuer

Transcription commonly occurs in bursts, with alternating productive (ON) and quiescent (OFF) periods, governing mRNA production rates. Yet, how transcription is regulated through bursting dynamics remains unresolved. Here, we conduct…

Molecular Networks · Quantitative Biology 2025-11-11 Po-Ta Chen , Michal Levo , Benjamin Zoller , Thomas Gregor

D-xylose is the second most abundant monosaccharide found in lignocellulose and is of biotechnological importance for producing second-generation ethanol and other high-value chemical compounds. D-xylose conversion to ethanol is promoted by…

Quantitative Methods · Quantitative Biology 2024-05-22 Ana Paula Wives , Isabelli Seiler de Medeiros Mendes , Sofia Turatti dos Santos , Diego Bonatto

Our understanding of cell division control in bacteria still relies largely on interpreting correlations between phenomenological variables, with limited connection to the underlying molecular mechanisms. Here, we analytically solve a…

Competition among gametes for fertilization imposes strong selection. For external fertilizers, this selective pressure extends to eggs for which spawning conditions can range from sperm limitation (competition among eggs) to sexual…

Populations and Evolution · Quantitative Biology 2015-12-14 Daniel K. Okamoto

Bacteria often develop distinct phenotypes to adapt to environmental stress. In particular, they can produce biofilms, dense communities of bacteria that live in a complex extracellular matrix. Bacterial biofilms provide a safe haven from…

Quantitative Methods · Quantitative Biology 2025-08-29 Stephen Williams , Daravuth Cheam , Michele K. Nishiguchi , Suzanne S. Sindi , Shilpa Khatri , Erica M. Rutter

Mucus is a biological gel covering the surface of several tissues and insuring key biological functions, including as a protective barrier against dehydration, pathogens penetration, or gastric acids. Mucus biological functioning requires a…

Soft Condensed Matter · Physics 2022-01-05 Domenico Larobina , Angelo Pommella , Adrian-Marie Philippe , Med Yassine Nagazi , Luca Cipelletti

Interstellar methanol is considered to be a parent species of larger, more complex organic molecules. A physicochemical simulation of infalling parcels of matter is performed for a low-mass star-forming system to trace the chemical…

Solar and Stellar Astrophysics · Physics 2014-09-09 Maria N. Drozdovskaya , Catherine Walsh , Ruud Visser , Daniel Harsono , Ewine F. van Dishoeck

Many {\it ribosomes} simultaneously move on the same messenger RNA (mRNA), each synthesizing separately a copy of the same protein. In contrast to the earlier models, here {\it we develop a ``unified'' theoretical model} that not only…

Biological Physics · Physics 2007-05-23 Aakash Basu , Debashish Chowdhury

Stability of coarse particles against gravity is an important issue in dense suspensions (fresh concrete, foodstuff, etc.). On the one hand, it is known that they are stable at rest when the interstitial paste has a high enough yield…

Soft Condensed Matter · Physics 2012-06-11 Guillaume Ovarlez , François Bertrand , Philippe Coussot , Xavier Chateau

Residual stress and plastic strain in additive manufactured materials can exhibit significant microscopic variation at the powder scale, profoundly influencing the overall properties of printed components. This variation depends on…

Materials Science · Physics 2024-06-19 Yangyiwei Yang , Somnath Bharech , Nick Finger , Xiandong Zhou , Joerg Schroeder , Bai-Xiang Xu

We report the temperature, pressure and composition dependence of some basic properties of model liquid water-methanol mixtures. For this purpose the isobaric-isothermal molecular dynamics computer simulations are employed. Our principal…

Soft Condensed Matter · Physics 2025-04-01 M. Cruz Sanchez , V. Trejos Montoya , O. Pizio