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The community structure of a complex network can be determined by finding the partitioning of its nodes that maximizes modularity. Many of the proposed algorithms for doing this work by recursively bisecting the network. We show that this…

Computers and Society · Computer Science 2015-05-13 Yudong Sun , Bogdan Danila , Kresimir Josic , Kevin E. Bassler

Understanding the structural mechanisms of multi-layer networks is essential for analyzing complex systems characterized by multiple interacting layers. This work studies the problem of estimating connection probabilities in multi-layer…

Methodology · Statistics 2026-02-26 Dingzi Guo , Diqing Li , Jingyi Wang , Wen-Xin Zhou

Despite deep-learning being state-of-the-art for data-driven model predictions, it has not yet found frequent application in ecology. Given the low sample size typical in many environmental research fields, the default choice for the…

Applications · Statistics 2022-09-29 Marieke Wesselkamp , Niklas Moser , Maria Kalweit , Joschka Boedecker , Carsten F. Dormann

Link prediction in networks is typically accomplished by estimating or ranking the probabilities of edges for all pairs of nodes. In practice, especially for social networks, the data are often collected by egocentric sampling, which means…

Computation · Statistics 2018-03-14 Yun-Jhong Wu , Elizaveta Levina , Ji Zhu

We propose a general modeling framework for marked Poisson processes observed over time or space. The modeling approach exploits the connection of the nonhomogeneous Poisson process intensity with a density function. Nonparametric Dirichlet…

Methodology · Statistics 2011-11-02 Matthew A. Taddy , Athanasios Kottas

Bipartite networks provide an effective resource for representing, characterizing, and modeling several abstract and real-world systems and structures involving binary relations, which include food webs, social interactions, and…

Social and Information Networks · Computer Science 2024-02-01 Alexandre Benatti , Luciano da F. Costa

Accurately identifying spatial patterns of species distribution is crucial for scientific insight and societal benefit, aiding our understanding of species fluctuations. The increasing quantity and quality of ecological datasets present…

Crossover between neural networks is considered disruptive due to the strong functional dependency between connection weights. We propose a modularity-based linkage model at the weight level to preserve functionally dependent communities…

Neural and Evolutionary Computing · Computer Science 2023-06-05 Yukai Qiao , Marcus Gallagher

Link prediction is a key problem for network-structured data, attracting considerable research efforts owing to its diverse applications. The current link prediction methods focus on general networks and are overly dependent on either the…

Social and Information Networks · Computer Science 2024-01-17 Min Zhou , Bisheng Li , Menglin Yang , Lujia Pan

Massive network datasets are becoming increasingly common in scientific applications. Existing community detection methods encounter significant computational challenges for such massive networks due to two reasons. First, the full network…

Methodology · Statistics 2025-03-24 Subhankar Bhadra , Marianna Pensky , Srijan Sengupta

Species distribution modeling (SDM) plays a crucial role in investigating habitat suitability and addressing various ecological issues. While likelihood analysis is commonly used to draw ecological conclusions, it has been observed that its…

Methodology · Statistics 2023-07-03 Yusuke Saigusa , Shinto Eguchi , Osamu Komori

In the domain of network biology, the interactions among heterogeneous genomic and molecular entities are represented through networks. Link prediction (LP) methodologies are instrumental in inferring missing or prospective associations…

Molecular Networks · Quantitative Biology 2023-12-05 Ahmad F. Al Musawi , Satyaki Roy , Preetam Ghosh

The problem of link prediction has attracted considerable recent attention from various domains such as sociology, anthropology, information science, and computer sciences. A link prediction algorithm is proposed based on link similarity…

Social and Information Networks · Computer Science 2015-02-17 Maosheng Jiang , Yonxiang Chen , Ling Chen

A variety of machine learning tasks---e.g., matrix factorization, topic modelling, and feature allocation---can be viewed as learning the parameters of a probability distribution over bipartite graphs. Recently, a new class of models for…

Machine Learning · Statistics 2017-12-07 Victor Veitch , Ekansh Sharma , Zacharie Naulet , Daniel M. Roy

With ever-increasing amounts of online information available, modeling and predicting individual preferences-for books or articles, for example-is becoming more and more important. Good predictions enable us to improve advice to users, and…

Social and Information Networks · Computer Science 2017-02-06 Antonia Godoy-Lorite , Roger Guimera , Cristopher Moore , Marta Sales-Pardo

Link prediction algorithms can help to understand the structure and dynamics of scientific collaborations and the evolution of Science. However, available algorithms based on similarity between nodes of collaboration networks are bounded by…

Physics and Society · Physics 2020-11-25 Marta Tuninetti , Alberto Aleta , Daniela Paolotti , Yamir Moreno , Michele Starnini

Predictions of missing links of incomplete networks like protein-protein interaction networks or very likely but not yet existent links in evolutionary networks like friendship networks in web society can be considered as a guideline for…

Data Analysis, Statistics and Probability · Physics 2009-10-27 Linyuan Lv , Ci-Hang Jin , Tao Zhou

Networks are powerful data structures, but are challenging to work with for conventional machine learning methods. Network Embedding (NE) methods attempt to resolve this by learning vector representations for the nodes, for subsequent use…

Machine Learning · Computer Science 2019-04-30 Bo Kang , Jefrey Lijffijt , Tijl De Bie

Matrix completion aims to predict missing elements in a partially observed data matrix which in typical applications, such as collaborative filtering, is large and extremely sparsely observed. A standard solution is matrix factorization,…

Machine Learning · Computer Science 2019-08-06 Xiangju Qin , Paul Blomstedt , Samuel Kaski

In this paper, based on the coupled social networks (CSN), we propose a hybrid algorithm to nonlinearly integrate both social and behavior information of online users. Filtering algorithm based on the coupled social networks, which…

Social and Information Networks · Computer Science 2015-06-19 Da-Cheng Nie , Zi-Ke Zhang , Jun-lin Zhou , Yan Fu , Kui Zhang