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We study the rotational dynamics of a flexible polymer initially wrapped around a rigid rod and unwinding from it. This dynamics is of interest in several problems in biology and constitutes a fundamental instance of polymer relaxation from…

Soft Condensed Matter · Physics 2014-07-29 Jean-Charles Walter , Marco Baiesi , Enrico Carlon , Helmut Schiessel

We discuss the finite-time collapse, also referred as blow-up, of the solutions of a discrete nonlinear Schr\"{o}dinger (DNLS) equation incorporating linear and nonlinear gain and loss. This DNLS system appears in many inherently discrete…

Pattern Formation and Solitons · Physics 2019-01-30 G. Fotopoulos , N. I. Karachalios , V. Koukouloyannis , K. Vetas

We study the coarsening dynamics of the three-dimensional random field Ising model using Monte Carlo numerical simulations. We test the dynamic scaling and super-scaling properties of global and local two-time observables. We treat in…

Disordered Systems and Neural Networks · Physics 2009-08-12 Camille Aron , Claudio Chamon , Leticia F. Cugliandolo , Marco Picco

Molecular dynamics simulations with varying damping are used to examine the effects of inertia and spatial dimension on sheared disordered solids in the athermal, quasistatic limit. In all cases the distribution of avalanche sizes follows a…

Soft Condensed Matter · Physics 2015-03-17 K. Michael Salerno , Mark O. Robbins

The connection between fundamental interactions acting in molecules in a fluid and macroscopically measured properties, such as the viscosity between colloidal particles coated with polymers, is studied here. The role that hydrodynamic and…

Soft Condensed Matter · Physics 2015-09-02 A. Gama Goicochea , M. A. Balderas Altamirano , R. Lopez-Esparza , M. A. Waldo , E. Perez

We study the destruction of dynamical localization, experimentally observed in an atomic realization of the kicked rotor, by a deterministic Hamiltonian perturbation, with a temporal periodicity incommensurate with the principal driving. We…

We study the coarsening dynamics of a two dimensional system via lattice Boltzmann numerical simulations. The system under consideration is a biphasic system consisting of domains of a dispersed phase closely packed together in a continuous…

Soft Condensed Matter · Physics 2020-10-07 Francesca Pelusi , Mauro Sbragaglia , Roberto Benzi

In this work we used dissipative particle dynamics simulations to study the copolymerization process in the presence of spatial heterogeneities caused by incompatibility between polymerizing monomers. The polymer sequence details as well as…

Soft Condensed Matter · Physics 2017-09-26 Alexey A. Gavrilov , Alexander V. Chertovich

We study the problem of sinking particles in a realistic oceanic flow, with major energetic structures in the mesoscale, focussing in the range of particle sizes and densities appropriate for marine biogenic particles. Our aim is to unify…

Atmospheric and Oceanic Physics · Physics 2017-07-03 Pedro Monroy , Emilio Hernández-García , Vincent Rossi , Cristóbal López

We consider the ordered and disordered dynamics for monolayers of rolling self-interacting particles with an offset center of mass and a non-isotropic inertia tensor. The rolling constraint is considered as a simplified model of a very…

Computational Physics · Physics 2015-05-19 Byungsoo Kim , Vakhtang Putkaradze

It is known that a finite-size homogeneous granular fluid develops an hydrodynamic-like instability when dissipation crosses a threshold value. This instability is analyzed in terms of modified hydrodynamic equations: first, a source term…

Statistical Mechanics · Physics 2009-10-31 R. Soto , M. Mareschal , M. Malek Mansour

By analytically solving some simple models of phase-ordering kinetics, we suggest a mechanism for the onset of non-equilibrium behaviour in colloid-polymer mixtures. These mixtures can function as models of atomic systems; their physics…

Soft Condensed Matter · Physics 2016-08-31 R. M. L. Evans , W. C. K. Poon

We review the recent researches of numerical simulations on faulting, which are interpreted in this paper as the evolution of the state of the fault plane and the evolution of fault structure. The theme includes the fault constitutive…

Geophysics · Physics 2010-07-26 Hideo Aochi , Ryosuke Ando

We review some recent coarse-graining and multi-scale methods, but also put forward some new ideas for addressing such issues. We find that, if one is guided by nonequilibrium statistical mechanics and thermodynamics, it is possible to…

Soft Condensed Matter · Physics 2009-11-06 Patrick Ilg , Vlasis Mavrantzas , Hans Christian Öttinger

We consider the problem of gravitational clustering in a D-dimensional expanding Universe and derive scaling relations connecting the exact mean two-point correlation function with the linear mean correlation function, in the quasi-linear…

Astrophysics · Physics 2009-10-31 T. Padmanabhan , Nissim Kanekar

We present 3D smoothed particle hydrodynamics simulations of the collapse of clumps formed through gravitational instability in the outer part of a protoplanetary disc. The initial conditions are taken directly from a global disc…

Earth and Planetary Astrophysics · Physics 2015-06-11 M. Galvagni , T. Hayfield , A. C. Boley , L. Mayer , R. Roskar , P. Saha

We have used computer simulation to study the collapse of a hydrophobic chain in water. We find that the mechanism of collapse is much like that of a first order phase transition. The evaporation of water in the vicinity of the polymer…

Soft Condensed Matter · Physics 2007-05-23 Pieter Rein ten Wolde , David Chandler

We present a statistical model of a dilute polymer solution in good solvent in the presence of low-molecular weight cosolvent. We investigate the conformational changes of the polymer induced by a change of the cosolvent concentration and…

Statistical Mechanics · Physics 2014-11-10 Yu. A. Budkov , A. L. Kolesnikov , N. Georgi , M. G. Kiselev

We present results of tests of the evolution of small ``fluid elements'' in cosmological N--body simulations, to examine the validity of their treatment as particles. We find that even very small elements typically collapse along one axis…

Astrophysics · Physics 2009-10-28 B. Kuhlman , A. L. Melott , S. F. Shandarin

Two-dimensional driven dissipative flows are generally integrable via a conservation law that is singular at equilibria. Nonintegrable dynamical systems are confined to n*3 dimensions. Even driven-dissipative deterministic dynamical systems…

Statistical Mechanics · Physics 2015-06-24 J. L. McCauley