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Subgraph GNNs enhance message-passing GNNs expressivity by representing graphs as sets of subgraphs, demonstrating impressive performance across various tasks. However, their scalability is hindered by the need to process large numbers of…

Machine Learning · Computer Science 2025-06-02 Guy Bar-Shalom , Yam Eitan , Fabrizio Frasca , Haggai Maron

Graph algorithms, such as shortest path finding, play a crucial role in enabling essential applications and services like infrastructure planning and navigation, making their correctness important. However, thoroughly testing graph…

Software Engineering · Computer Science 2025-02-24 Wenqi Yan , Manuel Rigger , Anthony Wirth , Van-Thuan Pham

Graph encoder embedding, a recent technique for graph data, offers speed and scalability in producing vertex-level representations from binary graphs. In this paper, we extend the applicability of this method to a general graph model, which…

Machine Learning · Statistics 2024-10-24 Cencheng Shen

The integration of multi-omic data is pivotal for understanding complex diseases, but its high dimensionality and noise present significant challenges. Graph Neural Networks (GNNs) offer a robust framework for analyzing large-scale…

Quantitative Methods · Quantitative Biology 2024-12-23 Heming Zhang , Di Huang , Yixin Chen , Fuhai Li

Graph clustering aims at discovering a natural grouping of the nodes such that similar nodes are assigned to a common cluster. Many different algorithms have been proposed in the literature: for simple graphs, for graphs with attributes…

Machine Learning · Computer Science 2023-11-06 Ylli Sadikaj , Yllka Velaj , Sahar Behzadi , Claudia Plant

Low-dimensional embeddings of knowledge graphs and behavior graphs have proved remarkably powerful in varieties of tasks, from predicting unobserved edges between entities to content recommendation. The two types of graphs can contain…

Machine Learning · Computer Science 2019-08-29 Yuting Ye , Xuwu Wang , Jiangchao Yao , Kunyang Jia , Jingren Zhou , Yanghua Xiao , Hongxia Yang

Graph representation learning has become a ubiquitous component in many scenarios, ranging from social network analysis to energy forecasting in smart grids. In several applications, ensuring the fairness of the node (or graph)…

Machine Learning · Computer Science 2022-07-13 Indro Spinelli , Simone Scardapane , Amir Hussain , Aurelio Uncini

In this paper we address the problem of change detection in multi-spectral images by proposing a data-driven framework of graph-based data fusion. The main steps of the proposed approach are: (i) The generation of a multi-temporal pixel…

Computer Vision and Pattern Recognition · Computer Science 2020-04-03 David Alejandro Jimenez Sierra , Hernán Darío Benítez Restrepo , Hernán Darío Vargas Cardonay , Jocelyn Chanussot

Graph Neural Networks (GNNs) have demonstrated significant achievements in processing graph data, yet scalability remains a substantial challenge. To address this, numerous graph coarsening methods have been developed. However, most…

Machine Learning · Computer Science 2024-12-19 Shuyin Xia , Xinjun Ma , Zhiyuan Liu , Cheng Liu , Sen Zhao , Guoyin Wang

The issue of bias (i.e., systematic unfairness) in machine learning models has recently attracted the attention of both researchers and practitioners. For the graph mining community in particular, an important goal toward algorithmic…

Human-Computer Interaction · Computer Science 2022-10-18 Agapi Rissaki , Bruno Scarone , David Liu , Aditeya Pandey , Brennan Klein , Tina Eliassi-Rad , Michelle A. Borkin

Recent work on Graph Neural Networks has demonstrated that self-supervised pretraining can further enhance performance on downstream graph, link, and node classification tasks. However, the efficacy of pretraining tasks has not been fully…

Machine Learning · Computer Science 2023-03-28 Jonathan Pilault , Michael Galkin , Bahare Fatemi , Perouz Taslakian , David Vasquez , Christopher Pal

Textual graphs are ubiquitous in real-world applications, featuring rich text information with complex relationships, which enables advanced research across various fields. Textual graph representation learning aims to generate…

Machine Learning · Computer Science 2024-08-22 Wenbin Hu , Huihao Jing , Qi Hu , Haoran Li , Yangqiu Song

Visualizing high-dimensional data has been a focus in data analysis communities for decades, which has led to the design of many algorithms, some of which are now considered references (such as t-SNE for example). In our era of overwhelming…

Machine Learning · Computer Science 2017-02-21 Johan Paratte , Nathanaël Perraudin , Pierre Vandergheynst

Dynamic graphs arise in a plethora of practical scenarios such as social networks, communication networks, and financial transaction networks. Given a dynamic graph, it is fundamental and essential to learn a graph representation that is…

Machine Learning · Computer Science 2021-06-15 Menglin Yang , Ziqiao Meng , Irwin King

Graph-based learning is a cornerstone for analyzing structured data, with node classification as a central task. However, in many real-world graphs, nodes lack informative feature vectors, leaving only neighborhood connectivity and class…

Machine Learning · Computer Science 2025-10-14 Sujan Chakraborty , Rahul Bordoloi , Anindya Sengupta , Olaf Wolkenhauer , Saptarshi Bej

The complexity and non-Euclidean structure of graph data hinder the development of data augmentation methods similar to those in computer vision. In this paper, we propose a feature augmentation method for graph nodes based on topological…

Machine Learning · Computer Science 2021-04-07 Rui Song , Fausto Giunchiglia , Ke Zhao , Hao Xu

Partitioning graphs into blocks of roughly equal size is widely used when processing large graphs. Currently there is a gap in the space of available partitioning algorithms. On the one hand, there are streaming algorithms that have been…

Data Structures and Algorithms · Computer Science 2021-12-23 Marcelo Fonseca Faraj , Christian Schulz

In graph embedding, the connectivity information of a graph is used to represent each vertex as a point in a d-dimensional space. Unlike the original, irregular structural information, such a representation can be used for a multitude of…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-09-01 Taha Atahan Akyildiz , Amro Alabsi Aljundi , Kamer Kaya

The application of large language models (LLMs) to graph data has attracted a lot of attention recently. LLMs allow us to use deep contextual embeddings from pretrained models in text-attributed graphs, where shallow embeddings are often…

Artificial Intelligence · Computer Science 2025-02-19 Shima Khoshraftar , Niaz Abedini , Amir Hajian

Representation learning on graphs has been gaining attention due to its wide applicability in predicting missing links, and classifying and recommending nodes. Most embedding methods aim to preserve certain properties of the original graph…

Social and Information Networks · Computer Science 2019-09-13 Palash Goyal , Di Huang , Sujit Rokka Chhetri , Arquimedes Canedo , Jaya Shree , Evan Patterson