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Biomaterial systems have allowed for the in vitro production of complex, emergent tissue behaviors that were not possible with conventional 2D culture systems allowing for analysis of the normal development as well as disease processes. We…

Tissues and Organs · Quantitative Biology 2019-10-16 Matthew S Hall , Joseph T Decker , Lonnie D Shea

The meniscal tissue is a layered material with varying properties influenced by collagen content and arrangement. Understanding the relationship between structure and properties is crucial for disease management, treatment development, and…

Computational Engineering, Finance, and Science · Computer Science 2023-07-26 J. Waghorne , F. P. Bonomo , A. Rabbani , D. Bell , O. Barrera

A key problem toward the use of microorganisms as bio-factories is reaching and maintaining cellular communities at a desired density and composition so that they can efficiently convert their biomass into useful compounds. Promising…

Systems and Control · Electrical Eng. & Systems 2023-12-18 Sara Maria Brancato , Davide Salzano , Francesco De Lellis , Davide Fiore , Giovanni Russo , Mario di Bernardo

Bacteria often form surface-bound communities, embedded in a self-produced extracellular matrix, called biofilms. Quantitative studies of their growth have typically focused on unconfined expansion above solid or semi-solid surfaces,…

Soft Condensed Matter · Physics 2022-05-11 George T. Fortune , Nuno M. Oliveira , Raymond E. Goldstein

How systems are endowed with migration capacity is a fascinating question with implications ranging from the design of novel active systems to the control of microbial populations. Bacteria, which can be found in a variety of environments,…

Biological Physics · Physics 2017-07-03 Marc Hennes , Julien Tailleur , Gaëlle Charron , Adrian Daerr

Advances in synthetic biology allow us to engineer bacterial collectives with pre-specified characteristics. However, the behavior of these collectives is difficult to understand, as cellular growth and division as well as extra-cellular…

Cell Behavior · Quantitative Biology 2017-09-13 James J. Winkle , Oleg Igoshin , Matthew R. Bennett , Krešimir Josić , William Ott

Bacteria are prolific at colonizing diverse surfaces under a widerange of environmental conditions, and exhibit fascinating examples of self-organization across scales. Though it has recently attracted considerable interest, the role of…

Soft Condensed Matter · Physics 2024-03-25 M. T. Khan , J. Cammann , A. Sengupta , E. Renzi , M. G. Mazza

Neuronal networks in dissociated culture combined with cell engineering technology offer a pivotal platform to constructively explore the relationship between structure and function in living neuronal networks. Here, we fabricated defined…

Neurons and Cognition · Quantitative Biology 2023-01-11 Yuya Sato , Hideaki Yamamoto , Hideyuki Kato , Takashi Tanii , Shigeo Sato , Ayumi Hirano-Iwata

Fungal mycelium, a living network of filamentous threads, thrives on lignocellulosic waste and exhibits rapid growth, hydrophobicity, and intrinsic regeneration, offering a potential means to create next-generation sustainable and…

Colonies of bacteria grown on thin agar plate exhibit fractal patterns as a result of adaptation to their environments. The bacterial colony pattern formation is regulated crucially by chemotaxis, the movement of cells along a chemical…

Biological Physics · Physics 2013-05-24 Waipot Ngamsaad , Kannika Khompurngson

We propose a continuous model for meniscus cartilage regeneration triggered by two populations of cells migrating and (de)differentiating within an artificial scaffold with a known structure. The described biological processes are…

Numerical Analysis · Mathematics 2023-08-23 Elise Grosjean , Bernd Simeon , Christina Surulescu

The spatial organization of bacteria in dense biofilms is key to their collective behaviour, and understanding it will be important for medical and technological applications. Here we study the morphology of a compact biofilm that undergoes…

Biological Physics · Physics 2019-03-05 Xin Wang , Howard A. Stone , Ramin Golestanian

Bacteria are ubiquitous in our daily lives, either as motile planktonic cells or as immobilized surface-attached biofilms. These different phenotypic states play key roles in agriculture, environment, industry, and medicine; hence, it is…

Populations and Evolution · Quantitative Biology 2021-12-07 Jenna A. Ott , Selena Chiu , Daniel B. Amchin , Tapomoy Bhattacharjee , Sujit S. Datta

Information processing in the mammalian brain relies on a careful regulation of the membrane potential dynamics of its constituent neurons, which propagates across the neuronal tissue via electrical signalling. We recently reported the…

Neurons and Cognition · Quantitative Biology 2019-02-19 Rosa Martinez-Corral , Jintao Liu , Arthur Prindle , Gurol M. Suel , Jordi Garcia-Ojalvo

We review the computation models for biofilm and bacteria cells, providing perspectives on biofilm's various properties and potential serving as engineering living materials (ELMs), considering the omnipresence of such biological matter.…

Biological Physics · Physics 2022-06-09 Hanfeng Zhai

Angstrom-scale fluidic channels are ubiquitous in nature, and play an important role in regulating cellular traffic, signaling, and responding to stimuli. Synthetic channels are now a reality with the emergence of several cutting-edge…

Mesoscale and Nanoscale Physics · Physics 2022-12-20 Yi You , Abdulghani Ismail , Gwang-Hyeon Nam , Solleti Goutham , Ashok Keerthi , Boya Radha

Microbial consortia offer significant biotechnological advantages over monocultures for bioproduction. However, industrial deployment is hampered by the lack of scalable architectures to ensure stable coexistence between populations.…

Systems and Control · Electrical Eng. & Systems 2025-11-12 Sara Maria Brancato , Davide Salzano , Davide Fiore , Francesco De Lellis , Giovanni Russo , Mario di Bernardo

Biofilms are complex, self-organized consortia of microorganisms that produce a functional, protective matrix of biomolecules. Physically, the structure of a biofilm can be described as an entangled polymer network which grows and changes…

Biological Physics · Physics 2016-11-08 Marco G. Mazza

Emergence of regular spatial patterns is a hallmark in living matter ranging from subcellular organelles to developing embryos and to ecosystems. Mechanisms for the formation of ordered spatial patterns in biology often require chemical…

Biological Physics · Physics 2024-03-15 Haoran Xu , Yilin Wu

Experiments have recently shown the feasibility of utilising bacteria as micro-scale robotic devices, with special attention paid to the development of bacteria-driven micro-swimmers taking advantage of built-in actuation and sensing…

Soft Condensed Matter · Physics 2019-02-14 Christian Esparza Lopez , Albane Thery , Eric Lauga
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