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Models of simple excitable dynamics on graphs are an efficient framework for studying the interplay between network topology and dynamics. This subject is a topic of practical relevance to diverse fields, ranging from neuroscience to…

Neurons and Cognition · Quantitative Biology 2015-01-12 C. Fretter , A. Lesne , C. C. Hilgetag , M. -Th. Hütt

This article discusses how the individual morphological properties of basic objects (e.g. neurons, molecules and aggregates), jointly with their particular spatial distribution, can determine the connectivity and dynamics of systems…

Molecular Networks · Quantitative Biology 2007-05-23 Luciano da Fontoura Costa

A system level view of cellular processes for human and several organisms can be cap- tured by analyzing molecular interaction networks. A molecular interaction network formed of differentially expressed genes and their interactions helps…

Molecular Networks · Quantitative Biology 2016-11-09 Jeethu V. Devasia , Priya Chandran

Despite considerable progress in genome- and proteome-based high-throughput screening methods and in rational drug design, the increase in approved drugs in the past decade did not match the increase of drug development costs. Network…

Molecular Networks · Quantitative Biology 2013-05-14 Peter Csermely , Tamas Korcsmaros , Huba J. M. Kiss , Gabor London , Ruth Nussinov

We propose a novel model-selection method for dynamic networks. Our approach involves training a classifier on a large body of synthetic network data. The data is generated by simulating nine state-of-the-art random graph models for dynamic…

Social and Information Networks · Computer Science 2024-05-28 Lourens Touwen , Doina Bucur , Remco van der Hofstad , Alessandro Garavaglia , Nelly Litvak

Market instability has been extensively studied using mathematical approaches to characterize complex trading dynamics and detect structural change points. This study explores the potential for early warning of market instability by…

Physics and Society · Physics 2026-04-24 Mariko I. Ito , Hiroyuki Hasada , Yudai Honma , Takaaki Ohnishi , Tsutomu Watanabe , Kazuyuki Aihara

In a Nature article, Scheffer et al. presented a novel data-driven framework to predict critical transitions in complex systems. These transitions, which may stem from failures, degradation, or adversarial actions, have been attributed to…

Optimization and Control · Mathematics 2022-08-09 Mohammad Pirani , Saber Jafarpour

In this paper, we study the crucial elements of complex networks, namely nodes, and edges and their properties such as their community structure, which play an important role in dictating the robustness of the network towards structural…

Social and Information Networks · Computer Science 2021-02-04 V. Parimi , A. Pal , S. Ruj , P. Kumaraguru , T. Chakraborty

Predicting the occurrence of links is a fundamental problem in networks. In the link prediction problem we are given a snapshot of a network and would like to infer which interactions among existing members are likely to occur in the near…

Social and Information Networks · Computer Science 2010-11-19 L. Backstrom , J. Leskovec

The identification of the limiting factors in the dynamical behavior of complex systems is an important interdisciplinary problem which often can be traced to the spectral properties of an underlying network. By deriving a general relation…

Disordered Systems and Neural Networks · Physics 2007-07-03 Adilson E. Motter

The availability of empirical data that capture the structure and behavior of complex networked systems has been greatly increased in recent years, however a versatile computational toolbox for unveiling a complex system's nodal and…

Physics and Society · Physics 2022-03-28 Ting-Ting Gao , Gang Yan

The application of machine learning in sciences has seen exciting advances in recent years. As a widely applicable technique, anomaly detection has been long studied in the machine learning community. Especially, deep neural nets-based…

Machine Learning · Statistics 2023-11-03 Taoli Cheng

Infectious disease remains, despite centuries of work to control and mitigate its effects, a major problem facing humanity. This paper reviews the mathematical modelling of infectious disease epidemics on networks, starting from the…

Popular Physics · Physics 2015-06-03 Thomas House

Deep neural networks (DNNs) are powerful machine learning models and have succeeded in various artificial intelligence tasks. Although various architectures and modules for the DNNs have been proposed, selecting and designing the…

Neural and Evolutionary Computing · Computer Science 2018-01-24 Shinichi Shirakawa , Yasushi Iwata , Youhei Akimoto

Machine learning and data mining techniques are utiized for enhancement of the security of any network. Researchers used machine learning for pattern detection, anomaly detection, dynamic policy setting, etc. The methods allow the program…

Cryptography and Security · Computer Science 2024-08-31 Aviral Srivastava , Dhyan Thakkar , Sharda Valiveti , Pooja Shah , Gaurang Raval

The study of network structure has uncovered signatures of the organization of complex systems. However, there is also a need to understand how to control them; for example, identifying strategies to revert a diseased cell to a healthy…

Molecular Networks · Quantitative Biology 2016-04-19 Alexander J. Gates , Luis M. Rocha

With an increasing amount of observations on the dynamics of many complex systems, it is required to reveal the underlying mechanisms behind these complex dynamics, which is fundamentally important in many scientific fields such as climate,…

Neurons and Cognition · Quantitative Biology 2025-03-19 Zhendong Yu , Haiping Huang

Human behavior presents significant challenges for data-driven approaches and machine learning, particularly in modeling the emergent and complex dynamics observed in social dilemmas. These challenges complicate the accurate prediction of…

Physics and Society · Physics 2024-12-17 Huaiyu Tan , Yikang Lu , Alfonso de Miguel-Arribas , Lei Shi

Inclusion of high throughput technologies in the field of biology has generated massive amounts of biological data in the recent years. Now, transforming these huge volumes of data into knowledge is the primary challenge in computational…

Machine Learning · Computer Science 2021-12-06 Dibyendu Ghosh , Srija Chakraborty , Hariprasad Kodamana , Supriya Chakraborty

We study the phase synchronization of Kuramoto's oscillators in small parts of networks known as motifs. We first report on the system dynamics for the case of a scale-free network and show the existence of a non-trivial critical point. We…

Statistical Mechanics · Physics 2009-11-10 Yamir Moreno , Miguel Vazquez-Prada , Amalio F. Pacheco
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