Related papers: BioNLP-OST 2019 RDoC Tasks: Multi-grain Neural Rel…

This paper describes our submission to the DISRPT2021 Shared Task on Discourse Unit Segmentation, Connective Detection, and Relation Classification. Our system, called DisCoDisCo, is a Transformer-based neural classifier which enhances…

Named Entity Recognition (NER) plays an important role in a wide range of natural language processing tasks, such as relation extraction, question answering, etc. However, previous studies on NER are limited to particular genres, using…

Large, open-source consortium datasets have spurred the development of new and increasingly powerful machine learning approaches in brain connectomics. However, one key question remains: are we capturing biologically relevant and…

Objective: To optimize in-context learning in biomedical natural language processing by improving example selection. Methods: We introduce a novel multi-mode retrieval-augmented generation (MMRAG) framework, which integrates four retrieval…

\textbf{Objective:} We aimed to develop an advanced multi-task large language model (LLM) framework to extract multiple types of information about dietary supplements (DS) from clinical records. \textbf{Methods:} We used four core DS…

Preventable adverse drug reactions as a result of medical errors present a growing concern in modern medicine. As drug-drug interactions (DDIs) may cause adverse reactions, being able to extracting DDIs from drug labels into…

Engagement between client and therapist is a critical determinant of therapeutic success. We propose a multi-dimensional natural language processing (NLP) framework that objectively classifies engagement quality in counseling sessions based…

We present our system submission for SemEval 2025 Task 5, which focuses on cross-lingual subject classification in the English and German academic domains. Our approach leverages bilingual data during training, employing negative sampling…

Top-down attention plays a crucial role in the human vision system, wherein the brain initially obtains a rough overview of a scene to discover salient cues (i.e., overview first), followed by a more careful finer-grained examination (i.e.,…

This work tackles the problem of generating a medical report for multi-image panels. We apply our solution to the Renal Direct Immunofluorescence (RDIF) assay which requires a pathologist to generate a report based on observations across…

This paper addresses the challenges posed by the unstructured nature and high-dimensional semantic complexity of electronic health record texts. A deep learning method based on attention mechanisms is proposed to achieve unified modeling…

While large pre-trained language models accumulate a lot of knowledge in their parameters, it has been demonstrated that augmenting it with non-parametric retrieval-based memory has a number of benefits from accuracy improvements to data…

Learning a high-dimensional dense representation for vocabulary terms, also known as a word embedding, has recently attracted much attention in natural language processing and information retrieval tasks. The embedding vectors are typically…

Adverse drug reactions (ADRs) are one of the leading causes of mortality in health care. Current ADR surveillance systems are often associated with a substantial time lag before such events are officially published. On the other hand,…

Medical document OCR is challenging due to complex layouts, domain-specific terminology, and noisy annotations, while requiring strict field-level exact matching. Existing OCR systems and general-purpose vision-language models often fail to…

The core challenge in numerous real-world applications is to match an inquiry to the best document from a mutable and finite set of candidates. Existing industry solutions, especially latency-constrained services, often rely on similarity…

Remote sensing scene classification (RSSC) is a critical task with diverse applications in land use and resource management. While unimodal image-based approaches show promise, they often struggle with limitations such as high intra-class…

We present an attention-based ranking framework for learning to order sentences given a paragraph. Our framework is built on a bidirectional sentence encoder and a self-attention based transformer network to obtain an input order invariant…

Discourse parsing, the task of analyzing the internal rhetorical structure of texts, is a challenging problem in natural language processing. Despite the recent advances in neural models, the lack of large-scale, high-quality corpora for…

In this paper we present a deep-learning model that competed at SemEval-2018 Task 2 "Multilingual Emoji Prediction". We participated in subtask A, in which we are called to predict the most likely associated emoji in English tweets. The…