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We introduce a deep, generative autoencoder capable of learning hierarchies of distributed representations from data. Successive deep stochastic hidden layers are equipped with autoregressive connections, which enable the model to be…

Machine Learning · Computer Science 2014-05-21 Karol Gregor , Ivo Danihelka , Andriy Mnih , Charles Blundell , Daan Wierstra

Learning representations of neural network weights given a model zoo is an emerging and challenging area with many potential applications from model inspection, to neural architecture search or knowledge distillation. Recently, an…

Machine Learning · Computer Science 2022-09-30 Konstantin Schürholt , Boris Knyazev , Xavier Giró-i-Nieto , Damian Borth

This paper considers physical systems described by hidden states and indirectly observed through repeated measurements corrupted by unmodeled nuisance parameters. A network-based representation learns to disentangle the coherent information…

Computational Physics · Physics 2022-02-08 Pawan Bharadwaj , Matthew Li , Laurent Demanet

Deep generative models have been wildly successful at learning coherent latent representations for continuous data such as video and audio. However, generative modeling of discrete data such as arithmetic expressions and molecular…

Machine Learning · Statistics 2017-03-07 Matt J. Kusner , Brooks Paige , José Miguel Hernández-Lobato

Popularized by their strong image generation performance, diffusion and related methods for generative modeling have found widespread success in visual media applications. In particular, diffusion methods have enabled new approaches to data…

Image and Video Processing · Electrical Eng. & Systems 2026-01-28 Yibo Yang , Stephan Mandt

Learning high-level causal representations together with a causal model from unstructured low-level data such as pixels is impossible from observational data alone. We prove under mild assumptions that this representation is however…

Machine Learning · Statistics 2022-10-12 Johann Brehmer , Pim de Haan , Phillip Lippe , Taco Cohen

We introduce Prototype Generation, a stricter and more robust form of feature visualisation for model-agnostic, data-independent interpretability of image classification models. We demonstrate its ability to generate inputs that result in…

Computer Vision and Pattern Recognition · Computer Science 2023-10-02 Arush Tagade , Jessica Rumbelow

Learning on synthetic data and transferring the resulting properties to their real counterparts is an important challenge for reducing costs and increasing safety in machine learning. In this work, we focus on autoencoder architectures and…

Computer Vision and Pattern Recognition · Computer Science 2022-04-04 Steve Dias Da Cruz , Bertram Taetz , Thomas Stifter , Didier Stricker

The autoencoder is an unsupervised learning paradigm that aims to create a compact latent representation of data by minimizing the reconstruction loss. However, it tends to overlook the fact that most data (images) are embedded in a…

Machine Learning · Computer Science 2023-10-26 Alokendu Mazumder , Tirthajit Baruah , Bhartendu Kumar , Rishab Sharma , Vishwajeet Pattanaik , Punit Rathore

Explainable machine learning has attracted much interest in the community where the stakes are high. Counterfactual explanations methods have become an important tool in explaining a black-box model. The recent advances have leveraged the…

Machine Learning · Computer Science 2025-09-03 Wei Zhang , Brian Barr , John Paisley

Machine learning algorithms have difficulties to generalize over a small set of examples. Humans can perform such a task by exploiting vast amount of background knowledge they possess. One method for enhancing learning algorithms with…

Machine Learning · Computer Science 2020-06-09 Michal Badian , Shaul Markovitch

We extend the framework of variational autoencoders to represent transformations explicitly in the latent space. In the family of hierarchical graphical models that emerges, the latent space is populated by higher order objects that are…

Machine Learning · Computer Science 2020-04-24 Giorgio Giannone , Saeed Saremi , Jonathan Masci , Christian Osendorfer

It has been hypothesized that human-level visual perception requires a generative approach in which internal representations result from inverting a decoder. Yet today's most successful vision models are non-generative, relying on an…

Computer Vision and Pattern Recognition · Computer Science 2025-12-19 Jack Brady , Bernhard Schölkopf , Thomas Kipf , Simon Buchholz , Wieland Brendel

Autoencoders are composed of coding and decoding units, hence they hold the inherent potential of high-performance data compression and signal compressed sensing. The main disadvantages of current autoencoders comprise the following several…

Machine Learning · Computer Science 2022-07-28 Honggui Li , Dimitri Galayko , Maria Trocan , Mohamad Sawan

Feature extraction becomes increasingly important as data grows high dimensional. Autoencoder as a neural network based feature extraction method achieves great success in generating abstract features of high dimensional data. However, it…

Machine Learning · Computer Science 2018-02-22 Qinxue Meng , Daniel Catchpoole , David Skillicorn , Paul J. Kennedy

This work describes a novel data-driven latent space inference framework built on paired autoencoders to handle observational inconsistencies when solving inverse problems. Our approach uses two autoencoders, one for the parameter space and…

Machine Learning · Computer Science 2026-01-19 Emma Hart , Bas Peters , Julianne Chung , Matthias Chung

Reconstructing components of a genomic mixture from data obtained by means of DNA sequencing is a challenging problem encountered in a variety of applications including single individual haplotyping and studies of viral communities.…

Genomics · Quantitative Biology 2019-11-14 Ziqi Ke , Haris Vikalo

Employing a forward diffusion chain to gradually map the data to a noise distribution, diffusion-based generative models learn how to generate the data by inferring a reverse diffusion chain. However, this approach is slow and costly…

Machine Learning · Statistics 2023-09-08 Huangjie Zheng , Pengcheng He , Weizhu Chen , Mingyuan Zhou

Proteins are responsible for the most diverse set of functions in biology. The ability to extract information from protein sequences and to predict the effects of mutations is extremely valuable in many domains of biology and medicine.…

Quantitative Methods · Quantitative Biology 2018-01-04 Sam Sinai , Eric Kelsic , George M. Church , Martin A. Nowak

Autoencoders are commonly trained using element-wise loss. However, element-wise loss disregards high-level structures in the image which can lead to embeddings that disregard them as well. A recent improvement to autoencoders that helps…

Computer Vision and Pattern Recognition · Computer Science 2020-04-06 Gustav Grund Pihlgren , Fredrik Sandin , Marcus Liwicki
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