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Biomedical entity linking is the task of identifying mentions of biomedical concepts in text documents and mapping them to canonical entities in a target thesaurus. Recent advancements in entity linking using BERT-based models follow a…

Computation and Language · Computer Science 2021-03-10 Rajarshi Bhowmik , Karl Stratos , Gerard de Melo

Fine-tuning pre-trained models have achieved impressive performance on standard natural language processing benchmarks. However, the resultant model generalizability remains poorly understood. We do not know, for example, how excellent…

Computation and Language · Computer Science 2023-01-26 Luoqiu Li , Xiang Chen , Hongbin Ye , Zhen Bi , Shumin Deng , Ningyu Zhang , Huajun Chen

In this paper, we report our method for the Information Extraction task in 2019 Language and Intelligence Challenge. We incorporate BERT into the multi-head selection framework for joint entity-relation extraction. This model extends…

Computation and Language · Computer Science 2019-09-27 Weipeng Huang , Xingyi Cheng , Taifeng Wang , Wei Chu

Document-level Relation Extraction (RE) is a more challenging task than sentence RE as it often requires reasoning over multiple sentences. Yet, human annotators usually use a small number of sentences to identify the relationship between a…

Computation and Language · Computer Science 2021-06-04 Quzhe Huang , Shengqi Zhu , Yansong Feng , Yuan Ye , Yuxuan Lai , Dongyan Zhao

Large language models (LLMs) have created a new paradigm for natural language processing. Despite their advancement, LLM-based methods still lag behind traditional approaches in document-level relation extraction (DocRE), a critical task…

Computation and Language · Computer Science 2024-12-10 Xingzuo Li , Kehai Chen , Yunfei Long , Min Zhang

Background: Identifying relationships between clinical events and temporal expressions is a key challenge in meaningfully analyzing clinical text for use in advanced AI applications. While previous studies exist, the state-of-the-art…

Computation and Language · Computer Science 2020-04-15 Hong Guan , Jianfu Li , Hua Xu , Murthy Devarakonda

With the advent of artificial intelligence (AI), many researchers are attempting to extract structured information from document-level biomedical literature by fine-tuning large language models (LLMs). However, they face significant…

Neural and Evolutionary Computing · Computer Science 2026-02-26 Lei Zhao , Ling Kang , Quan Guo

Document-level relation extraction (DocRE) is the task of identifying all relations between each entity pair in a document. Evidence, defined as sentences containing clues for the relationship between an entity pair, has been shown to help…

Computation and Language · Computer Science 2023-02-20 Youmi Ma , An Wang , Naoaki Okazaki

Motivated by the fact that many relations cross the sentence boundary, there has been increasing interest in document-level relation extraction (DocRE). DocRE requires integrating information within and across sentences, capturing complex…

Computation and Language · Computer Science 2022-04-12 John Giorgi , Gary D. Bader , Bo Wang

Disentanglement is a problem in which multiple conversations occur in the same channel simultaneously, and the listener should decide which utterance is part of the conversation he will respond to. We propose a new model, named Dialogue…

Computation and Language · Computer Science 2021-09-14 Tianda Li , Jia-Chen Gu , Xiaodan Zhu , Quan Liu , Zhen-Hua Ling , Zhiming Su , Si Wei

Entity matching is a fundamental task in data cleaning and data integration. With the rapid adoption of large language models (LLMs), recent studies have explored zero-shot and few-shot prompting to improve entity matching accuracy.…

Databases · Computer Science 2025-12-01 Rohan Bopardikar , Jin Wang , Jia Zou

Pretrained contextualized language models such as BERT have achieved impressive results on various natural language processing benchmarks. Benefiting from multiple pretraining tasks and large scale training corpora, pretrained models can…

Information Retrieval · Computer Science 2020-05-28 Zhiyu Chen , Mohamed Trabelsi , Jeff Heflin , Yinan Xu , Brian D. Davison

With a growing number of BERTology work analyzing different components of pre-trained language models, we extend this line of research through an in-depth analysis of discourse information in pre-trained and fine-tuned language models. We…

Computation and Language · Computer Science 2022-04-12 Patrick Huber , Giuseppe Carenini

Recently, fine-tuning pre-trained language models (e.g., multilingual BERT) to downstream cross-lingual tasks has shown promising results. However, the fine-tuning process inevitably changes the parameters of the pre-trained model and…

Computation and Language · Computer Science 2020-10-06 Zihan Liu , Genta Indra Winata , Andrea Madotto , Pascale Fung

Sentence-level relation extraction (RE) aims at identifying the relationship between two entities in a sentence. Many efforts have been devoted to this problem, while the best performing methods are still far from perfect. In this paper, we…

Computation and Language · Computer Science 2022-09-23 Wenxuan Zhou , Muhao Chen

In this paper, we propose a novel approach for generating document embeddings using a combination of Sentence-BERT (SBERT) and RoBERTa, two state-of-the-art natural language processing models. Our approach treats sentences as tokens and…

Information Retrieval · Computer Science 2023-08-28 Shashidhar Reddy Javaji , Krutika Sarode

Relation extraction (RE) consists in identifying and structuring automatically relations of interest from texts. Recently, BERT improved the top performances for several NLP tasks, including RE. However, the best way to use BERT, within a…

Computation and Language · Computer Science 2020-11-26 Walid Hafiane , Joel Legrand , Yannick Toussaint , Adrien Coulet

Document-level relation extraction (DocRE) is an active area of research in natural language processing (NLP) concerned with identifying and extracting relationships between entities beyond sentence boundaries. Compared to the more…

Recent advances in natural language processing (NLP) have been driven bypretrained language models like BERT, RoBERTa, T5, and GPT. Thesemodels excel at understanding complex texts, but biomedical literature, withits domain-specific…

Computation and Language · Computer Science 2025-07-28 K. Sahit Reddy , N. Ragavenderan , Vasanth K. , Ganesh N. Naik , Vishalakshi Prabhu , Nagaraja G. S

Dialogue relation extraction (RE) is to predict the relation type of two entities mentioned in a dialogue. In this paper, we propose a simple yet effective model named SimpleRE for the RE task. SimpleRE captures the interrelations among…

Computation and Language · Computer Science 2023-04-26 Fuzhao Xue , Aixin Sun , Hao Zhang , Jinjie Ni , Eng Siong Chng