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Detecting and segmenting brain metastases is a tedious and time-consuming task for many radiologists, particularly with the growing use of multi-sequence 3D imaging. This study demonstrates automated detection and segmentation of brain…

Image and Video Processing · Electrical Eng. & Systems 2019-12-30 Endre Grøvik , Darvin Yi , Michael Iv , Elisabeth Tong , Daniel L. Rubin , Greg Zaharchuk

Transfer learning is widely used for training machine learning models. Here, we study the role of transfer learning for training fully convolutional networks (FCNs) for medical image segmentation. Our experiments show that although transfer…

Computer Vision and Pattern Recognition · Computer Science 2022-04-05 Davood Karimi , Simon K. Warfield , Ali Gholipour

Ureteroscopy and cystoscopy are the gold standard methods to identify and treat tumors along the urinary tract. It has been reported that during a normal procedure a rate of 10-20 % of the lesions could be missed. In this work we study the…

Image and Video Processing · Electrical Eng. & Systems 2021-04-09 Jorge F. Lazo , Sara Moccia , Aldo Marzullo , Michele Catellani , Ottavio De Cobelli , Benoit Rosa , Michel de Mathelin , Elena De Momi

Prostate cancer is the second leading cause of cancer death among men in the United States. The diagnosis of prostate MRI often relies on the accurate prostate zonal segmentation. However, state-of-the-art automatic segmentation methods…

Image and Video Processing · Electrical Eng. & Systems 2022-06-20 Alex Ling Yu Hung , Haoxin Zheng , Qi Miao , Steven S. Raman , Demetri Terzopoulos , Kyunghyun Sung

Convolutional Neural Networks (CNNs) have shown to be powerful medical image segmentation models. In this study, we address some of the main unresolved issues regarding these models. Specifically, training of these models on small medical…

Computer Vision and Pattern Recognition · Computer Science 2022-12-06 Davood Karimi , Ali Gholipour

Full waveform inversion (FWI) is a powerful tool for reconstructing material fields based on sparsely measured data obtained by wave propagation. For specific problems, discretizing the material field with a neural network (NN) improves the…

Machine Learning · Computer Science 2024-08-02 Divya Shyam Singh , Leon Herrmann , Qing Sun , Tim Bürchner , Felix Dietrich , Stefan Kollmannsberger

Fully convolutional networks (FCNs), including UNet and VNet, are widely-used network architectures for semantic segmentation in recent studies. However, conventional FCN is typically trained by the cross-entropy or Dice loss, which only…

Image and Video Processing · Electrical Eng. & Systems 2021-01-26 Kelei He , Chunfeng Lian , Ehsan Adeli , Jing Huo , Yang Gao , Bing Zhang , Junfeng Zhang , Dinggang Shen

Accurate medical image segmentation is essential for diagnosis and treatment planning of diseases. Convolutional Neural Networks (CNNs) have achieved state-of-the-art performance for automatic medical image segmentation. However, they are…

Image and Video Processing · Electrical Eng. & Systems 2020-11-05 Ran Gu , Guotai Wang , Tao Song , Rui Huang , Michael Aertsen , Jan Deprest , Sébastien Ourselin , Tom Vercauteren , Shaoting Zhang

A major challenge in stroke research and stroke recovery predictions is the determination of a stroke lesion's extent and its impact on relevant brain systems. Manual segmentation of stroke lesions from 3D magnetic resonance (MR) imaging…

Image and Video Processing · Electrical Eng. & Systems 2023-06-21 Sovesh Mohapatra , Advait Gosai , Anant Shinde , Aleksei Rutkovskii , Sirisha Nouduri , Gottfried Schlaug

Transfer learning leverages pre-trained model features from a large dataset to save time and resources when training new models for various tasks, potentially enhancing performance. Due to the lack of large datasets in the medical imaging…

Image and Video Processing · Electrical Eng. & Systems 2023-11-10 Gabriel Efrain Humpire-Mamani , Colin Jacobs , Mathias Prokop , Bram van Ginneken , Nikolas Lessmann

Convolutional Neural Networks (CNN) have emerged as powerful tools for learning discriminative image features. In this paper, we propose a framework of 3-D fully CNN models for Glioblastoma segmentation from multi-modality MRI data. By…

Computer Vision and Pattern Recognition · Computer Science 2016-11-15 Darvin Yi , Mu Zhou , Zhao Chen , Olivier Gevaert

Background and objectives. Domain shift is a generalisation problem of machine learning models that occurs when the data distribution of the training set is different to the data distribution encountered by the model when it is deployed.…

Computer Vision and Pattern Recognition · Computer Science 2022-07-28 Manuel García-Domínguez , César Domínguez , Jónathan Heras , Eloy Mata , Vico Pascual

Convolutional neural networks (CNNs) have achieved stateof-the-art performance for white matter (WM) tract segmentation based on diffusion magnetic resonance imaging (dMRI). These CNNs require a large number of manual delineations of the WM…

Computer Vision and Pattern Recognition · Computer Science 2021-06-02 Qi Lu , Chuyang Ye

Medical imaging based prostate cancer diagnosis procedure uses intra-operative transrectal ultrasound (TRUS) imaging to visualize the prostate shape and location to collect tissue samples. Correct tissue sampling from prostate requires…

Computer Vision and Pattern Recognition · Computer Science 2019-03-22 M. S. Hossain , A. P. Paplinski , J. M. Betts

Deep learning, especially convolutional neural networks (CNNs) and Transformer architectures, have become the focus of extensive research in medical image segmentation, achieving impressive results. However, CNNs come with inductive biases…

Image and Video Processing · Electrical Eng. & Systems 2024-09-20 Xiao Liu , Peng Gao , Tao Yu , Fei Wang , Ru-Yue Yuan

In Canada, prostate cancer is the most common form of cancer in men and accounted for 20% of new cancer cases for this demographic in 2022. Due to recent successes in leveraging machine learning for clinical decision support, there has been…

Image and Video Processing · Electrical Eng. & Systems 2023-12-01 Aditya Sridhar , Chi-en Amy Tai , Hayden Gunraj , Yuhao Chen , Alexander Wong

Parotid gland tumor is a common type of head and neck tumor. Segmentation of the parotid glands and tumors by MR images is important for the treatment of parotid gland tumors. However, segmentation of the parotid glands is particularly…

Computer Vision and Pattern Recognition · Computer Science 2022-12-27 Zi'an Xu , Yin Dai , Fayu Liu , Boyuan Wu , Weibing Chen , Lifu Shi

Due to the irregular motion, similar appearance and diverse shape, accurate segmentation of kidney tumor in CT images is a difficult and challenging task. To this end, we present a novel automatic segmentation method, termed as…

Computer Vision and Pattern Recognition · Computer Science 2020-04-06 Qian Yu , Yinghuan Shi , Jinquan Sun , Yang Gao , Yakang Dai , Jianbing Zhu

T2-weighted magnetic resonance imaging (MRI) and diffusion-weighted imaging (DWI) are essential components for cervical cancer diagnosis. However, combining these channels for training deep learning models are challenging due to…

Image and Video Processing · Electrical Eng. & Systems 2023-06-21 Reza Kalantar , Sebastian Curcean , Jessica M Winfield , Gigin Lin , Christina Messiou , Matthew D Blackledge , Dow-Mu Koh

Presenting whole slide images (WSIs) as graph will enable a more efficient and accurate learning framework for cancer diagnosis. Due to the fact that a single WSI consists of billions of pixels and there is a lack of vast annotated datasets…

Image and Video Processing · Electrical Eng. & Systems 2023-06-09 Milan Aryal , Nasim Yahyasoltani