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Network theory provides various tools for investigating the structural or functional topology of many complex systems found in nature, technology and society. Nevertheless, it has recently been realised that a considerable number of systems…

Data Analysis, Statistics and Probability · Physics 2012-03-23 Jonathan F. Donges , Hanna C. H. Schultz , Norbert Marwan , Yong Zou , Juergen Kurths

We propose a topological framework for the detection of Hopf bifurcations directly from time series, based on persistent homology applied to phase space reconstructions via Takens embedding within the framework of Topological Data Analysis.…

Dynamical Systems · Mathematics 2026-03-31 Jhonathan Barrios , Yásser Echávez , Carlos F. Álvarez

Complex dynamical systems are often modeled as networks, with nodes representing dynamical units which interact through the network's links. Gene regulatory networks, responsible for the production of proteins inside a cell, are an example…

Statistical Mechanics · Physics 2009-09-30 Zoran Levnajić

Critical phase transitions have proven to be a powerful concept to capture the phenomenology of many systems, including deeply non-equilibrium ones like living systems. The study of these phase transitions has overwhelmingly relied on…

Statistical Mechanics · Physics 2025-12-12 Leone V. Luzzatto , Mathias Casiulis , Stefano Martiniani , István A. Kovács

Within the context of topological data analysis, the problems of identifying topological significance and matching signals across datasets are important and useful inferential tasks in many applications. The limitation of existing solutions…

Algebraic Topology · Mathematics 2024-06-26 Inés García-Redondo , Anthea Monod , Anna Song

Many multi-variate time series obtained in the natural sciences and engineering possess a repetitive behavior, as for instance state-space trajectories of industrial machines in discrete automation. Recovering the times of recurrence from…

Computational Geometry · Computer Science 2025-05-20 Simon Schindler , Elias Steffen Reich , Saverio Messineo , Simon Hoher , Stefan Huber

Networked systems display complex patterns of interactions between a large number of components. In physical networks, these interactions often occur along structural connections that link components in a hard-wired connection topology,…

Neurons and Cognition · Quantitative Biology 2018-04-03 Jason Kim , Jonathan M. Soffer , Ari E. Kahn , Jean M. Vettel , Fabio Pasqualetti , Danielle S. Bassett

The statistical mechanical approach to complex networks is the dominant paradigm in describing natural and societal complex systems. The study of network properties, and their implications on dynamical processes, mostly focus on locally…

Statistical Mechanics · Physics 2013-06-27 Giovanni Petri , Martina Scolamiero , Irene Donato , Francesco Vaccarino

The control of complex systems is an ongoing challenge of complexity research. Recent advances using concepts of structural control deduce a wide range of control related properties from the network representation of complex systems. Here,…

Statistical Mechanics · Physics 2013-12-31 Márton Pósfai , Philipp Hövel

Within an increasingly digitalized organizational landscape, this research delves into the dynamics of decentralized collaboration, contrasting it with traditional collaboration models. An effective capturing of high-level collaborations…

Social and Information Networks · Computer Science 2024-10-10 Negin Maddah , Babak Heydari

The predictions of mean-field electrodynamics can now be probed using direct numerical simulations of random flows and magnetic fields. When modelling astrophysical MHD, it is important to verify that such simulations are in agreement with…

Data Analysis, Statistics and Probability · Physics 2018-09-12 Irina Makarenko , Paul Bushby , Andrew Fletcher , Robin Henderson , Nikolay Makarenko , Anvar Shukurov

Revealing physical interactions in complex systems from observed collective dynamics constitutes a fundamental inverse problem in science. Current reconstruction methods require access to a system's model or dynamical data at a level of…

Physics and Society · Physics 2018-01-18 Mor Nitzan , Jose Casadiego , Marc Timme

The dynamical systems found in Nature are rarely isolated. Instead they interact and influence each other. The coupling functions that connect them contain detailed information about the functional mechanisms underlying the interactions and…

Adaptation and Self-Organizing Systems · Physics 2017-11-15 Tomislav Stankovski , Tiago Pereira , Peter V. E. McClintock , Aneta Stefanovska

Communication networks form the backbone of our society. Topology control algorithms optimize the topology of such communication networks. Due to the importance of communication networks, a topology control algorithm should guarantee…

Software Engineering · Computer Science 2018-05-10 Roland Kluge , Michael Stein , Gergely Varró , Andy Schürr , Matthias Hollick , Max Mühlhäuser

This article discusses how the individual morphological properties of basic objects (e.g. neurons, molecules and aggregates), jointly with their particular spatial distribution, can determine the connectivity and dynamics of systems…

Molecular Networks · Quantitative Biology 2007-05-23 Luciano da Fontoura Costa

A general scheme is proposed and tested to control the symmetry breaking instability of a homogeneous solution of a spatially extended multispecies model, defined on a network. The inherent discreteness of the space makes it possible to act…

To find interesting structure in networks, community detection algorithms have to take into account not only the network topology, but also dynamics of interactions between nodes. We investigate this claim using the paradigm of…

Social and Information Networks · Computer Science 2012-03-19 Rumi Ghosh , Kristina Lerman

In exploring the simulation of human rhythmic perception and synchronization capabilities, this study introduces a computational model inspired by the physical and biological processes underlying rhythm processing. Utilizing a reservoir…

Neurons and Cognition · Quantitative Biology 2025-03-28 Zhongju Yuan , Wannes Van Ransbeeck , Geraint Wiggins , Dick Botteldooren

Inspired by topological data analysis techniques, we introduce persistent homology observables and apply them in a geometric analysis of the dynamics of quantum field theories. As a prototype application, we consider data from a…

Quantum Gases · Physics 2021-09-23 Daniel Spitz , Jürgen Berges , Markus K. Oberthaler , Anna Wienhard

In this paper, we propose a concept to design, track, and compare application-specific feature definitions expressed as sets of critical points. Our work has been inspired by the observation that in many applications a large variety of…

Machine Learning · Computer Science 2020-11-18 Wito Engelke , Talha Bin Masood , Jakob Beran , Rodrigo Caballero , Ingrid Hotz