Related papers: An ASP-based Approach for Attractor Enumeration in…
Significant research has been conducted in recent years to extend Inductive Logic Programming (ILP) methods to induce Answer Set Programs (ASP). These methods perform an exhaustive search for the correct hypothesis by encoding an ILP…
Answer Set Programming (ASP) emerged in the late 1990ies as a paradigm for Knowledge Representation and Reasoning. The attractiveness of ASP builds on an expressive high-level modeling language along with the availability of powerful…
Estimating the influence that individual nodes have on one another in a Boolean network is essential to predict and control the system's dynamical behavior, for example, detecting key therapeutic targets to control pathways in models of…
Answer set programming (ASP) is a popular declarative programming paradigm with a wide range of applications in artificial intelligence. Oftentimes, when modeling an AI problem with ASP, and in particular when we are interested beyond…
Neural circuits in the brain perform a variety of essential functions, including input classification, pattern completion, and the generation of rhythms and oscillations that support processes such as breathing and locomotion. There is also…
We investigate how classifiers for Boolean networks (BNs) can be constructed and modified under constraints. A typical constraint is to observe only states in attractors or even more specifically steady states of BNs. Steady states of BNs…
Attractor neural networks consider that neural information is stored as stationary states of a dynamical system formed by a large number of interconnected neurons. The attractor property empowers a neural system to encode information…
We propose Answer Set Programming (ASP) as an approach for modeling and solving problems from the area of Declarative Process Mining (DPM). We consider here three classical problems, namely, Log Generation, Conformance Checking, and Query…
We provide the first classification of different types of Random Boolean Networks (RBNs). We study the differences of RBNs depending on the degree of synchronicity and determinism of their updating scheme. For doing so, we first define…
This study presents a method, along with its algorithmic and computational framework implementation, and performance verification for dynamical system identification. The approach incorporates insights from phase space structures, such as…
In this work, we develop a method to identify continuous-time nonlinear networked dynamics via the Koopman operator framework. The proposed technique consists of two steps: the first step identifies the neighbors of each node, and the…
The review presents a parameter switching algorithm and his applications which allows numerical approximation of any attractor of a class of continuous-time dynamical systems depending linearly on a real parameter. The considered classes of…
We present BoolSi, an open-source cross-platform command line tool for distributed simulations of deterministic Boolean networks with synchronous update. It uses MPI standard to support execution on computational clusters, as well as…
A novel approach for supervised classification is presented which sits at the intersection of machine learning and dynamical systems theory. At variance with other methodologies that employ ordinary differential equations for classification…
The evaluation of the number of attractors in Kauffman networks by Samuelsson and Troein is generalized to critical networks with one input per node and to networks with two inputs per node and different probability distributions for update…
The understanding of Boolean automata networks dynamics takes an important place in various domains of computer science such as computability, complexity and discrete dynamical systems. In this paper, we make a step further in this…
Complex diseases can be modeled as damage to intracellular networks that results in abnormal cell behaviors. Network-based dynamic models such as Boolean models have been employed to model a variety of biological systems including those…
While the solution counting problem for propositional satisfiability (#SAT) has received renewed attention in recent years, this research trend has not affected other AI solving paradigms like answer set programming (ASP). Although ASP…
In this paper, we present a simple yet effective Boolean map based representation that exploits connectivity cues for visual tracking. We describe a target object with histogram of oriented gradients and raw color features, of which each…
Neural networks are dynamical systems that compute with their dynamics. One example is the Hopfield model, forming an associative memory which stores patterns as global attractors of the network dynamics. From studies of dynamical networks…