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Aligning a sequence to a walk in a labeled graph is a problem of fundamental importance to Computational Biology. For finding a walk in an arbitrary graph with $|E|$ edges that exactly matches a pattern of length $m$, a lower bound based on…

Data Structures and Algorithms · Computer Science 2022-02-01 Daniel Gibney , Sharma V. Thankachan , Srinivas Aluru

We consider ordinal approximation algorithms for a broad class of utility maximization problems for multi-agent systems. In these problems, agents have utilities for connecting to each other, and the goal is to compute a maximum-utility…

Multiagent Systems · Computer Science 2017-11-30 Ben Abramowitz , Elliot Anshelevich

The \emph{Steiner tree} problem is one of the fundamental and classical problems in combinatorial optimization. In this paper, we study this problem in the $\mathcal{CONGESTED}$ $\mathcal{CLIQUE}$ model of distributed computing and present…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-07-31 Parikshit Saikia , Sushanta Karmakar

Over the past decade, we witness an increasing amount of interest in the design of exact exponential-time and parameterized algorithms for problems in Graph Drawing. Unfortunately, we still lack knowledge of general methods to develop such…

Data Structures and Algorithms · Computer Science 2023-10-10 Siddharth Gupta , Guy Sa'ar , Meirav Zehavi

We consider the problem of maximum a posteriori (MAP) inference in discrete graphical models. We present a parallel MAP inference algorithm called Bethe-ADMM based on two ideas: tree-decomposition of the graph and the alternating direction…

Artificial Intelligence · Computer Science 2013-09-27 Qiang Fu , Huahua Wang , Arindam Banerjee

A weakness of next-hop routing is that following a link or router failure there may be no routes between some source-destination pairs, or packets may get stuck in a routing loop as the protocol operates to establish new routes. In this…

Data Structures and Algorithms · Computer Science 2014-11-12 Glencora Borradaile , W. Sean Kennedy , Gordon Wilfong , Lisa Zhang

One powerful technique to solve NP-hard optimization problems in practice is branch-and-reduce search---which is branch-and-bound that intermixes branching with reductions to decrease the input size. While this technique is known to be very…

Data Structures and Algorithms · Computer Science 2018-10-26 Sebastian Lamm , Christian Schulz , Darren Strash , Robert Williger , Huashuo Zhang

We study the knapsack problem with graph theoretic constraints. That is, we assume that there exists a graph structure on the set of items of knapsack and the solution also needs to satisfy certain graph theoretic properties on top of…

Data Structures and Algorithms · Computer Science 2024-01-25 Palash Dey , Sudeshna Kolay , Sipra Singh

In recent years, non-parametric methods utilizing random walks on graphs have been used to solve a wide range of machine learning problems, but in their simplest form they do not scale well due to the quadratic complexity. In this paper, a…

Machine Learning · Computer Science 2012-10-19 Saeed Amizadeh , Bo Thiesson , Milos Hauskrecht

Given a pointed metric space $(X,\mathsf{dist}, w)$ on $n$ points, its Gromov's approximating tree is a 0-hyperbolic pseudo-metric space $(X,\mathsf{dist}_T)$ such that $\mathsf{dist}(x,w)=\mathsf{dist}_T(x,w)$ and $\mathsf{dist}(x, y)-2…

Computational Geometry · Computer Science 2025-09-30 Anders Cornect , Eduardo Martínez-Pedroza

An edge-ordered graph is a graph with a total ordering of its edges. A path $P=v_1v_2\ldots v_k$ in an edge-ordered graph is called increasing if $(v_iv_{i+1}) > (v_{i+1}v_{i+2})$ for all $i = 1,\ldots,k-2$; it is called decreasing if…

Combinatorics · Mathematics 2020-01-22 Frank Duque , Ruy Fabila-Monroy , Carlos Hidalgo-Toscano , Pablo Pérez-Lantero

We consider connectivity problems with orientation constraints. Given a directed graph $D$ and a collection of ordered node pairs $P$ let $P[D]=\{(u,v) \in P: D {contains a} uv{-path}}$. In the {\sf Steiner Forest Orientation} problem we…

Data Structures and Algorithms · Computer Science 2012-07-19 Marek Cygan , Guy Kortsarz , Zeev Nutov

Approximating the graph diameter is a basic task of both theoretical and practical interest. A simple folklore algorithm can output a 2-approximation to the diameter in linear time by running BFS from an arbitrary vertex. It has been open…

Computational Complexity · Computer Science 2021-11-16 Mina Dalirrooyfard , Ray Li , Virginia Vassilevska Williams

We present improved learning-augmented algorithms for finding an approximate minimum spanning tree (MST) for points in an arbitrary metric space. Our work follows a recent framework called metric forest completion (MFC), where the learned…

Data Structures and Algorithms · Computer Science 2026-03-02 Nate Veldt , Thomas Stanley , Benjamin W. Priest , Trevor Steil , Keita Iwabuchi , T. S. Jayram , Grace J. Li , Geoffrey Sanders

We study the approximability of a number of graph problems: treewidth and pathwidth of graphs, one-shot black (and black-white) pebbling costs of directed acyclic graphs, and a variety of different graph layout problems such as minimum cut…

Computational Complexity · Computer Science 2011-09-23 Per Austrin , Toniann Pitassi , Yu Wu

We study a maximization problem for geometric network design. Given a set of $n$ compact neighborhoods in $\mathbb{R}^d$, select a point in each neighborhood, so that the longest spanning tree on these points (as vertices) has maximum…

Computational Geometry · Computer Science 2020-04-30 Ke Chen , Adrian Dumitrescu

A communication network can be modeled as a directed connected graph with edge weights that characterize performance metrics such as loss and delay. Network tomography aims to infer these edge weights from their pathwise versions measured…

Optimization and Control · Mathematics 2019-08-12 Mahmood Ettehad , Nick Duffield , Gregory Berkolaiko

Graph isomorphism, subgraph isomorphism, and maximum common subgraphs are classical well-investigated objects. Their (parameterized) complexity and efficiently tractable cases have been studied. In the present paper, for a given set of…

Data Structures and Algorithms · Computer Science 2024-03-22 Dieter Rautenbach , Florian Werner

In this paper we study the computational complexity of the Upward Planarity Extension problem, which takes in input an upward planar drawing $\Gamma_H$ of a subgraph $H$ of a directed graph $G$ and asks whether $\Gamma_H$ can be extended to…

Data Structures and Algorithms · Computer Science 2019-02-19 Giordano Da Lozzo , Giuseppe Di Battista , Fabrizio Frati

We investigate the Minimum Eccentricity Shortest Path problem in some structured graph classes. It asks for a given graph to find a shortest path with minimum eccentricity. Although it is NP-hard in general graphs, we demonstrate that a…

Discrete Mathematics · Computer Science 2015-11-17 Feodor F. Dragan , Arne Leitert
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