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Many graph-based learning problems can be cast as finding a good set of vertices nearby a seed set, and a powerful methodology for these problems is based on maximum flows. We introduce and analyze a new method for locally-biased…

Social and Information Networks · Computer Science 2016-05-30 Nate Veldt , David F. Gleich , Michael W. Mahoney

The fully implicit method is the most commonly used approach to solve black-oil problems in reservoir simulation. The method requires repeated linearization of large nonlinear systems and produces ill-condi\-tioned linear systems. We…

Numerical Analysis · Mathematics 2020-01-07 Øystein S. Klemetsdal , Atgeirr F. Rasmussen , Olav Møyner , Knut-Andreas Lie

Monte Carlo (MC) methods are important computational tools for molecular structure optimizations and predictions. When solvent effects are explicitly considered, MC methods become very expensive due to the large degree of freedom associated…

Biomolecules · Quantitative Biology 2022-02-09 Jiahui Chen , Weihua Geng , Guo-Wei Wei

Stochastic gradient methods are dominant in nonconvex optimization especially for deep models but have low asymptotical convergence due to the fixed smoothness. To address this problem, we propose a simple yet effective method for improving…

Machine Learning · Computer Science 2018-05-25 Jun Li , Hongfu Liu , Bineng Zhong , Yue Wu , Yun Fu

In this paper we present a novel pressure-based semi-implicit finite volume solver for the equations of compressible ideal, viscous and resistive magnetohydrodynamics (MHD). The new method is conservative for mass, momentum and total energy…

Numerical Analysis · Mathematics 2018-12-26 Michael Dumbser , Dinshaw S. Balsara , Maurizio Tavelli , Francesco Fambri

Mathematical models for the description, in a quantitative way, of the damages induced on the monuments by the action of specific pollutants are often systems of nonlinear, possibly degenerate, parabolic equations. Although some the…

Numerical Analysis · Mathematics 2014-03-18 Matteo Semplice

The impact of targeted replacement of individual terms in empirical force fields is quantitatively assessed for pure water, dichloromethane (DCM), and solvated K$^+$ and Cl$^-$ ions. For the electrostatics, point charges (PCs) and machine…

Chemical Physics · Physics 2023-11-13 Mike Devereux , Eric D. Boittier , Markus Meuwly

We present an exponentially convergent semi-implicit meshless algorithm for the solution of Navier-Stokes equations in complex domains. The algorithm discretizes partial derivatives at scattered points using radial basis functions as…

Numerical Analysis · Mathematics 2021-06-15 Shantanu Shahane , Surya Pratap Vanka

In a previous paper, we developed a new particle-in-cell method for the Vlasov-Maxwell system in which the electromagnetic fields and the equations of motion for the particles were cast in terms of scalar and vector potentials through a…

Plasma Physics · Physics 2024-11-12 Andrew J. Christlieb , William A. Sands , Stephen White

A recent reformulation [1] of the problem of Coulomb gases in the presence of a dynamical dielectric medium showed that finite temperature simulations of such systems can be accomplished on the basis of completely local Hamiltonians on a…

Soft Condensed Matter · Physics 2009-11-11 A. Duncan , R. D. Sedgewick

We propose an explicit-implicit scheme for numerically solving Special Relativistic Radiation Hydrodynamic (RRHD) equations, which ensures a conservation of total energy and momentum (matter and radiation). In our scheme, 0th and 1st moment…

High Energy Astrophysical Phenomena · Physics 2015-06-12 Hiroyuki R. Takahashi , Ken Ohsuga , Yuichiro Sekiguchi , Tsuyoshi Inoue , Kengo Tomida

We propose a second-order accurate semi-implicit and well-balanced finite volume scheme for the equations of ideal magnetohydrodynamics (MHD) including gravitational source terms. The scheme treats all terms associated with the acoustic…

Numerical Analysis · Mathematics 2023-06-29 Claudius Birke , Walter Boscheri , Christian Klingenberg

The anisotropic diffusion equation is imperative in understanding cosmic ray diffusion across the Galaxy, the heliosphere, and its interplay with the ambient magnetic field. This diffusion term contributes to the highly stiff nature of the…

High Energy Astrophysical Phenomena · Physics 2022-12-14 Pranab J. Deka , Lukas Einkemmer , Ralf Kissmann

Many interesting physical problems described by systems of hyperbolic conservation laws are stiff, and thus impose a very small time-step because of the restrictive CFL stability condition. In this case, one can exploit the superior…

Numerical Analysis · Mathematics 2025-02-17 Gabriella Puppo , Matteo Semplice , Giuseppe Visconti

Implicit solvation is an effective, highly coarse-grained approach in atomic-scale simulations to account for a surrounding liquid electrolyte on the level of a continuous polarizable medium. Originating in molecular chemistry with finite…

Chemical Physics · Physics 2021-08-06 Stefan Ringe , Nicolas G. Hörmann , Harald Oberhofer , Karsten Reuter

Implicit solvers present strong limitations when used on supercomputing facilities and in particular for adaptive mesh-refinement codes. We present a new method for implicit adaptive time-stepping on adaptive mesh refinement-grids. We…

Instrumentation and Methods for Astrophysics · Physics 2014-03-05 Benoit Commercon , Vincent Debout , Romain Teyssier

Modeling and simulation of High Power Microwave (HPM) breakdown, a multiscale phenomenon, is computationally expensive and requires solving Maxwell's equations (EM solver) coupled with a plasma continuity equation (plasma solver). In this…

Plasma Physics · Physics 2025-09-09 Kalp Pandya , Pratik Ghosh , Ajeya Mandikal , Shivam Gandha , Bhaskar Chaudhury

When dealing with shallow water simulations, the velocity profile is often assumed to be constant along the vertical axis. However, since in many applications this is not the case, modeling errors can be significant. Hence, in this work, we…

Numerical Analysis · Mathematics 2025-01-15 C. Caballero-Cárdenas , I. Gómez-Bueno , A. del Grosso , J. Koellermeier , T. Morales de Luna

This work presents a data-driven magnetostatic finite-element solver that is specifically well-suited to cope with strongly nonlinear material responses. The data-driven computing framework is essentially a multiobjective optimization…

Computational Physics · Physics 2020-12-24 Armin Galetzka , Dimitrios Loukrezis , Herbert De Gersem

We propose a time-adaptive predictor/multi-corrector method to solve hyperbolic partial differential equations, based on the generalized-$\alpha$ scheme that provides user-control on the numerical dissipation and second-order accuracy in…

Numerical Analysis · Mathematics 2022-10-11 Nicolas A. Labanda , Pouria Behnoudfar , Victor M. Calo