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Automated relation extraction (RE) from biomedical literature is critical for many downstream text mining applications in both research and real-world settings. However, most existing benchmarking datasets for bio-medical RE only focus on…
Many practical applications of AI in medicine consist of semi-supervised discovery: The investigator aims to identify features of interest at a resolution more fine-grained than that of the available human labels. This is often the scenario…
Hashing-based methods seek compact and efficient binary codes that preserve the neighborhood structure in the original data space. For most existing hashing methods, an image is first encoded as a vector of hand-crafted visual feature,…
Objective: To automatically create large labeled training datasets and reduce the efforts of feature engineering for training accurate machine learning models for clinical information extraction. Materials and Methods: We propose a distant…
Text embeddings are useful features in many applications such as semantic search and computing text similarity. Previous work typically trains models customized for different use cases, varying in dataset choice, training objective and…
Kernel-based methods enjoy powerful generalization capabilities in handling a variety of learning tasks. When such methods are provided with sufficient training data, broadly-applicable classes of nonlinear functions can be approximated…
Domain shift is a significant challenge in machine learning, particularly in medical applications where data distributions differ across institutions due to variations in data collection practices, equipment, and procedures. This can…
Hierarchical neural architectures are often used to capture long-distance dependencies and have been applied to many document-level tasks such as summarization, document segmentation, and sentiment analysis. However, effective usage of such…
Subgradient algorithms for training support vector machines have been quite successful for solving large-scale and online learning problems. However, they have been restricted to linear kernels and strongly convex formulations. This paper…
Unsupervised Relation Extraction (RE) aims to identify relations between entities in text, without having access to labeled data during training. This setting is particularly relevant for domain specific RE where no annotated dataset is…
As patients' access to their doctors' clinical notes becomes common, translating professional, clinical jargon to layperson-understandable language is essential to improve patient-clinician communication. Such translation yields better…
Self-supervised learning of speech representations has achieved impressive results in improving automatic speech recognition (ASR). In this paper, we show that data selection is important for self-supervised learning. We propose a simple…
Supervised learning-based segmentation methods typically require a large number of annotated training data to generalize well at test time. In medical applications, curating such datasets is not a favourable option because acquiring a large…
Since its introduction, unsupervised representation learning has attracted a lot of attention from the research community, as it is demonstrated to be highly effective and easy-to-apply in tasks such as dimension reduction, clustering,…
Deep neural networks have gained tremendous success in a broad range of machine learning tasks due to its remarkable capability to learn semantic-rich features from high-dimensional data. However, they often require large-scale labelled…
With an exponential explosive growth of various digital text information, it is challenging to efficiently obtain specific knowledge from massive unstructured text information. As one basic task for natural language processing (NLP),…
Case-based Reasoning (CBR) on high-dimensional and heterogeneous data is a trending yet challenging and computationally expensive task in the real world. A promising approach is to obtain low-dimensional hash codes representing cases and…
Nearest neighbors search is a fundamental problem in various research fields like machine learning, data mining and pattern recognition. Recently, hashing-based approaches, e.g., Locality Sensitive Hashing (LSH), are proved to be effective…
We present a set of novel neural supervised and unsupervised approaches for determining the readability of documents. In the unsupervised setting, we leverage neural language models, whereas in the supervised setting, three different neural…
Current state-of-the-art relation extraction methods typically rely on a set of lexical, syntactic, and semantic features, explicitly computed in a pre-processing step. Training feature extraction models requires additional annotated…