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In studying solidification process by simulations on the atomic scale, the modeling of crystal nucleation or amorphisation requires the construction of interatomic interactions that are able to reproduce the properties of both the solid and…

We present a generalized framework, renormalized density matrix downfolding (RDMD), to derive systematically improvable, highly accurate, and nonperturbative effective models from ab initio calculations. This framework moves beyond the…

Strongly Correlated Electrons · Physics 2025-02-27 Yueqing Chang , Sonali Joshi , Lucas K. Wagner

This paper describe a numerical simulation method for the interaction between laser pulses and low density plasmas based on hydrodynamic approximation. We investigate Backward Raman Amplifying (BRA) experiments and their variants. The…

Plasma Physics · Physics 2007-05-23 Wang Hong-Yu , Huang Zu-Qia

Quasicentroid molecular dynamics (QCMD) is a path-integral method for approximating nuclear quantum effects in dynamics simulations, which has given promising results for gas- and condensed-phase water. Here, by simulating the infrared…

Chemical Physics · Physics 2021-11-29 Christopher Haggard , Vijay Ganesh Sadhasivam , George Trenins , Stuart C. Althorpe

We present a new method which combines Car-Parrinello and Born-Oppenheimer molecular dynamics in order to accelerate density functional theory based ab-initio simulations. Depending on the system a gain in efficiency of one to two orders of…

Materials Science · Physics 2007-05-23 Thomas D. Kühne , Matthias Krack , Fawzi R. Mohamed , Michele Parrinello

Massively parallel computer architectures create new opportunities for the performance of long-timescale molecular dynamics (MD) simulations. Here, we introduce the path-accelerated molecular dynamics (PAMD) method that takes advantage of…

Computational Physics · Physics 2021-01-11 Jorge L. Rosa-Raíces , Bin Zhang , Thomas F. Miller

Infrared vibrational spectroscopy in the gas phase has emerged as a powerful tool to determine complex molecular structures with Angstrom accuracy. Among the different approaches IRMPD (InfraRed Multiple Photon Dissociation), which requires…

Chemical Physics · Physics 2024-06-24 Oznur Yeni , Baptiste Schindler , Baptiste Moge , Isabelle Compagnon

We present an efficient parallel algorithm for statistical Molecular Dynamics simulations of ion tracks in solids. The method is based on the Rare Event Enhanced Domain following Molecular Dynamics (REED-MD) algorithm, which has been…

Computational Physics · Physics 2009-05-04 Byoungseon Jeon , Niels Grønbech-Jensen

Driven Raman processes --- nearly resonant two-photon transitions through an intermediate state that is non-resonantly coupled and does not acquire a sizeable population --- are commonly treated with a simplified description in which the…

Quantum Physics · Physics 2015-06-11 Rui Han , Hui Khoon Ng , Berthold-Georg Englert

Neural networks have been applied to tackle many-body electron correlations for small molecules and physical models in recent years. Here we propose a new architecture that extends molecular neural networks with the inclusion of periodic…

Chemical Physics · Physics 2023-01-11 Xiang Li , Zhe Li , Ji Chen

A numerical simulation of vibrational excitation of molecules was devised, and used to excite computational models of common molecules into a prescribed, pure, normal vibration mode in the ground electronic state, with varying, controlable…

Astrophysics · Physics 2009-11-11 Renaud Papoular

Developing efficient path integral (PI) methods for atomistic simulations of vibrational spectra in heterogeneous condensed phases and interfaces has long been a challenging task. Here, we present the h-CMD method, short for hybrid centroid…

Chemical Physics · Physics 2025-05-08 Dil K. Limbu , Nathan London , Md Omar Faruque , Mohammad R. Momeni

A light-driven molecular motor system is investigated using a multi-state Brownian ratchet model described by a single effective coordinate with multiple electronic states in a dissipative environment. The rotational motion of the motor…

Chemical Physics · Physics 2019-03-22 Tatsushi Ikeda , Arend G. Dijkstra , Yoshitaka Tanimura

We present a new non-adiabatic ring polymer molecular dynamics (NRPMD) method based on the spin mapping formalism, which we refer to as the spin-mapping NRPMD (SM-NRPMD) approach. We derive the path-integral partition function expression…

Chemical Physics · Physics 2021-06-02 Duncan Bossion , Sutirtha N. Chowdhury , Pengfei Huo

We describe a new optical diagnostic for determining the composition of gases by measuring the motion of atoms and molecules trapped within very deep optical lattices. This non-resonant method is analogous to conventional Raman scattering,…

Optics · Physics 2022-01-19 A. Gerakis , M. N. Shneider , P. F. Barker

Equilibrium structures determine material properties and biochemical functions. We propose to machine learn phase-space averages, conventionally obtained by {\em ab initio} or force-field based molecular dynamics (MD) or Monte Carlo…

Chemical Physics · Physics 2022-07-27 Jan Weinreich , Dominik Lemm , Guido Falk von Rudorff , O. Anatole von Lilienfeld

Atomistic simulations with methods such as molecular dynamics are extremely powerful tools to understand nanoscale dynamical behavior. The resulting trajectories, by the virtue of being embedded in a high-dimensional configuration space,…

Statistical Mechanics · Physics 2020-08-27 Animesh Agarwal , Sandrasegaram Gnanakaran , Nicholas Hengartner , Arthur F. Voter , Danny Perez

Molecular dynamics simulates the~movements of atoms. Due to its high cost, many methods have been developed to "push the~simulation forward". One of them, metadynamics, can hasten the~molecular dynamics with the~help of variables describing…

Computational Engineering, Finance, and Science · Computer Science 2018-01-09 Jana Pazúriková , Jaroslav Oľha , Aleš Křenek , Vojtěch Spiwok

This work is to continue the development of the general model, Multi-Average Ion Collisional-Radiative Model (MAICRM), to calculate the plasma spectral properties of hot dense plasmas. In this model, an average ion is used to characterize…

Plasma Physics · Physics 2021-06-30 Xiaoying Han , Lingxiao Li , Zhensheng Dai , Wudi Zheng

Undoubtedly, Raman spectroscopy is one of the most elaborated spectroscopy tools in materials science, chemistry, medicine and optics. However, when it comes to the analysis of nanostructured specimens, accessing the Raman spectra resulting…