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Linear stability of synchronized states in networks of delay-coupled oscillators depends on the type of interaction, the network and oscillator properties. For inert oscillator response, found ubiquitously from biology to engineering,…

Adaptation and Self-Organizing Systems · Physics 2022-02-02 Dimitrios Prousalis , Lucas Wetzel

The structure of a genetic network is uncovered by studying its response to external stimuli (input signals). We present a theory of propagation of an input signal through a linear stochastic genetic network. It is found that there are…

Molecular Networks · Quantitative Biology 2009-11-11 Ovidiu Lipan , Wing H. Wong

Understanding mosquitoes life cycle is of great interest presently because of the increasing impact of vector borne diseases in several countries. There is evidence of oscillations in mosquito populations independent of seasonality, still…

Dynamical Systems · Mathematics 2018-01-12 Martin Strugarek , Laetitia Dufour , Nicolas Vauchelet , Luis Almeida , Benoît Perthame , Daniel Villela

In this paper we present a comprehensive analysis of the coherence phenomenon of two coupled dissipative oscillators. The action of a classical driving field on one of the oscillators is also analyzed. Master equations are derived for both…

Quantum Physics · Physics 2007-05-23 M. A. de Ponte , M. C. de Oliveira , M. H. Y. Moussa

The widespread development and use of neural networks have significantly enriched a wide range of computer algorithms and promise higher speed at lower cost. However, the imitation of neural networks by means of modern computing substrates…

Adaptation and Self-Organizing Systems · Physics 2024-08-28 Anna Zakharova , Vladimir V. Semenov

Oscillator networks display intricate synchronization patterns. Determining their stability typically requires incorporating the symmetries of the network coupling. Going beyond analyses that appeal only to a network's automorphism group,…

Dynamical Systems · Mathematics 2020-12-14 J. Emenheiser , A. Salova , J. Snyder , J. P. Crutchfield , R. M. D'Souza

Within systems biology there is an increasing interest in the stochastic behavior of genetic and biochemical reaction networks. An appropriate stochastic description is provided by the chemical master equation, which represents a continuous…

Biological Physics · Physics 2011-06-23 E. Giampieri , D. Remondini , L. de Oliveira , G. Castellani , P. Lió

This work concerns the question of how two important dynamical properties, oscillations and bistability, emerge in an important biological signaling network. Specifically, we consider a model for dual-site phosphorylation and…

Molecular Networks · Quantitative Biology 2019-03-08 Nida Obatake , Anne Shiu , Xiaoxian Tang , Angelica Torres

A complex network processing information or physical flows is usually characterized by a number of macroscopic quantities such as the diameter and the betweenness centrality. An issue of significant theoretical and practical interest is how…

Statistical Mechanics · Physics 2009-11-11 Xingang Wang , Ying-Cheng Lai , Chong Heng Lai

We study Boundary time crystals (BTCs) in the presence of non-Markovian dynamics. In contrast to BTCs observed in earlier works in the Markovian regime, we show that non-Markovian dynamics can be highly beneficial for stabilizing BTCs over…

Quantum Physics · Physics 2026-05-08 Bandita Das , Rahul Ghosh , Victor Mukherjee

We have studied the quantum oscillations of the conductance for arrays of connected mesoscopic metallic rings, in the presence of an external magnetic field. Several geometries have been considered: a linear array of rings connected with…

Disordered Systems and Neural Networks · Physics 2009-12-26 Christophe Texier , Pierre Delplace , Gilles Montambaux

We investigate cyclic dominance models and their extensions to both network systems and reaction-diffusion frameworks. Using linear stability analysis, we establish the relationship between the stability of synchronized states in network…

Dynamical Systems · Mathematics 2025-12-01 Idan Sorin , Alexander Nepomnyashchy

Networks of interacting nodes connected by edges arise in almost every branch of scientific enquiry. The connectivity structure of the network can force the existence of invariant subspaces, which would not arise in generic dynamical…

Dynamical Systems · Mathematics 2022-02-23 Claire M. Postlethwaite , Rob Sturman

The study of the response of amorphous materials to oscillatory strain is traditionally performed with many repeated cycles. We argue that it pays to consider carefully just one cycle (and may be a second), to reveal the rich physics that…

Soft Condensed Matter · Physics 2025-05-20 Itamar Procaccia , Tuhin Samanta

Superconducting qubits are an attractive platform for quantum computing since they have demonstrated high-fidelity quantum gates and extensibility to modest system sizes. Nonetheless, an outstanding challenge is stabilizing their…

Biochemical reaction networks in living cells usually involve reversible covalent modification of signaling molecules, such as protein phosphorylation. Under conditions of small molecule numbers, as is frequently the case in living cells,…

Molecular Networks · Quantitative Biology 2013-05-29 C. Metzner , M. Sajitz-Hermstein , M. Schmidberger , B. Fabry

A nonlinear oscillator with an abruptly inhomogeneous restoring force driven by an uniform oscillating force exhibits stochastic properties under specific resonance conditions. This behaviour elucidates the elementary mechanism of the…

Plasma Physics · Physics 2015-05-19 S. V. Bulanov , A. Yogo , T. Zh. Esirkepov , J. K. Koga , S. S. Bulanov , K. Kondo , M. Kando

Inhibitory circuits of relaxation oscillators are often-used models for the dynamics of biological networks. We present a qualitative and quantitative stability analysis of such a circuit constituted by three reciprocally coupled…

Chaotic Dynamics · Physics 2016-11-23 Justus T. C. Schwabedal , Drake E. Knapper , A. L. Shilnikov

Collective oscillation of cells in a population has been reported under diverse biological contexts and with vastly different molecular constructs. Could there be common principles similar to those that govern spontaneous oscillation in…

Cell Behavior · Quantitative Biology 2019-07-08 Shou-Wen Wang , Lei-Han Tang

Non-equilibrium dynamics are present in many aspects of our lives, ranging from microscopic physical systems to the functioning of the brain. What characterizes stochastic models of non-equilibrium processes is the breaking of the…

Statistical Mechanics · Physics 2025-01-27 Sergei Shmakov , Peter B. Littlewood
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